Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N19
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0746 + 24856362-24856710,24856799-24856986                       29   4.7  
04_03_0119 + 11485753-11486202                                         29   6.3  
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701...    29   6.3  

>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 128 ARSDTVPLRFAWVCIRRPPSW 190
           ARSDT P   A VC+RR P+W
Sbjct: 84  ARSDTWPC-LAGVCVRRKPAW 103


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 71  SCGXVFVWCXSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 199
           S G ++ WC S   P P  A S    L     C RR    SPL
Sbjct: 67  SRGGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109


>02_02_0123 +
           7015905-7015928,7015975-7016105,7017675-7017940,
           7018239-7018327,7018716-7018811,7018874-7018969,
           7019121-7019251,7020123-7020177,7020645-7020800,
           7021238-7021306,7021392-7021499,7022128-7022196,
           7022743-7022797,7023031-7023227
          Length = 513

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 117 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKM 227
           C ++P R  ++S   SRG A+   HL RR   + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,488,981
Number of Sequences: 37544
Number of extensions: 212765
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)