Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N12
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    29   1.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   2.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.7  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   8.6  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   8.6  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 580 LLGM*LWRVSLVECGKRFVGAVVGVIEMKKVGDRVV 473
           +LGM  W VSL++C ++ V A+V  +E   + D +V
Sbjct: 196 ILGMLHWVVSLIQCTEKAV-AMVYTVEQNSLDDHLV 230


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 474 TTRSPTFFISMTPTTAPTNRLP-HSTSDTRHSYIPRS 581
           T ++PTFF+S   ++  T   P HS ++ R S+  +S
Sbjct: 825 TLKTPTFFVSQEDSSFNTEYFPAHSEAERRLSFFAQS 861


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 495 FISMTPTTAPTNRLPHSTSDTRHSYIPRSTRASGSGFE 608
           F++ TP T P+N      S  + S   RST  SG GFE
Sbjct: 380 FLAQTPLTLPSNTKTPPASARQSSRRTRST--SGKGFE 415


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 468 RTTTRSPTFFISMTPTTAPTNRLP-HSTSDTRHSYIPRS 581
           R T R+PTFF+S       T   P +S ++ R S+  +S
Sbjct: 851 RRTLRTPTFFVSQDDNIVHTTFFPANSEAERRLSFFAQS 889


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 428 WRGPRAGALGVAADGAEPPNALAAGARSGDTPQRVNWAIL 309
           W G R    G A +  + P+    G   G+ P +  W +L
Sbjct: 251 WLGIRPTVRGTAMNPCDHPHGGGGGKSIGNKPSQSPWGVL 290


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 137 YLALAIVWSVKNHYHYYWGSSVRRFRKASNFLEDE 241
           +LAL   WSV N   YY     RRF+K    L  +
Sbjct: 354 FLALIFGWSVWNGASYYIDVFGRRFQKELEALRQQ 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,633
Number of Sequences: 5004
Number of extensions: 63737
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)