Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_N12
(922 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0683 + 5821598-5821916,5822348-5822987,5824250-5824329,582... 30 3.0
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 29 3.9
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 29 5.2
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 29 5.2
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 29 5.2
06_03_0089 - 16475677-16476309 29 6.9
04_04_1491 - 33962990-33964339 29 6.9
03_02_0198 + 6344952-6347483 29 6.9
08_01_0427 + 3761103-3761639,3762842-3762856 28 9.1
07_03_0633 + 20120560-20123464,20123608-20123672 28 9.1
06_03_0801 + 24714725-24715501 28 9.1
02_04_0413 + 22681957-22682035,22682253-22682788 28 9.1
>12_01_0683 +
5821598-5821916,5822348-5822987,5824250-5824329,
5825405-5825750,5826237-5826411,5826479-5826524,
5827179-5827384,5827616-5827696
Length = 630
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 206 RFRKASNFLEDERHDEEVSKKEREPGAPAVGR 301
R RKA+ LE+E D + ++ R P PA GR
Sbjct: 28 RKRKAAKDLEEEEEDLQPEEEARPPAPPAKGR 59
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 29.5 bits (63), Expect = 3.9
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 459 CSPRTTTRSPTFFISMTPTTAPTNRLPHSTSDTRHSYIPRSTRASGSGFELIRR--WRRL 632
CSP TTT + T ++T TT + P +TS +++ +S AS S L W RL
Sbjct: 48 CSPPTTTHTTT---TVTTTTTTASPAPVTTSPADVAWL-KSQLASNSLPLLASHDAWHRL 103
Query: 633 EKGF-PGFRTRHVASVVR 683
KG P R + + + R
Sbjct: 104 RKGINPRTREQQLFDINR 121
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 221 TLCESVAHCCPNNNGNGFSRSIQWLKP 141
TLCE +A CCPN N S + P
Sbjct: 156 TLCEGIAKCCPNAIVNVISNPVNSTVP 182
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 29.1 bits (62), Expect = 5.2
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = -1
Query: 535 KRFVGAVVGVIEMKKVGDRVVVLGEQQTAQRGLGERGEVL-VRARLELQRTAR---SP-- 374
++ VG VVG MK+ G G +T L E EV+ R R R R SP
Sbjct: 46 EKAVGVVVGKGCMKRSGGGSEGFGAAKTVTFALEEEEEVMETRGRGRRGRRPRVMWSPVA 105
Query: 373 -PTRSRQGRGQVILPSES 323
TR RQ G+V+ SE+
Sbjct: 106 AKTRGRQKAGEVVTDSEA 123
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 469 ELRLDRQPSSSL*RLQPRQQTAYRTLQAIRATATSQEAHV 588
E++L+++ SSS+ R+ + +TA + Q +R+ + AHV
Sbjct: 480 EMKLEKKRSSSMDRILGKLRTAQKKAQDMRSAVSDVAAHV 519
>06_03_0089 - 16475677-16476309
Length = 210
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 293 RPAHPALSPS*TPLHHAAHLQE 228
RPA PALSP PLH AA L +
Sbjct: 160 RPAAPALSPLGLPLHPAAALPD 181
>04_04_1491 - 33962990-33964339
Length = 449
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 413 AGALGVAADGAEPPNALAAGARSGDTPQRVNWAILLPIAPRPAHPALSPS 264
AG LGV DG AGAR + V ++P+ P P +L PS
Sbjct: 73 AGRLGVDGDGDRAILLNDAGARFVEATADVTLDSVVPLEPTPRVTSLHPS 122
>03_02_0198 + 6344952-6347483
Length = 843
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 732 GGTRGRHILLHFGDGLLARH*RRGAYETPGTPSRGGAISGSTQNPSPTHVCFLGCSCGAY 553
GG RH L GDG LA Y A +G+ + + H C + CSC AY
Sbjct: 344 GGCVRRHPLECHGDGFLAL-----PYTVRLPNGSVEAPAGAGNDKACAHTCLVDCSCTAY 398
>08_01_0427 + 3761103-3761639,3762842-3762856
Length = 183
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 410 GALGVAADGAEPPNALAAGARSGDTPQRVNWAILLPIAPRPAHPALSPS*TP 255
G LG G P + G R D + + W +L P+ P P P L S P
Sbjct: 129 GKLGTLVLGDRPRLTVGDG-RLNDDEKALRWEVL-PVLPNPGRPELPISIVP 178
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 197 CCPNNNGNGFSRSIQWLKPNKKNKTMKLP--LGAXYPAGVTPADY 69
C P +GF R++ LKPN + +K+ +G +P+ + Y
Sbjct: 715 CKPLAEADGFMRTLAGLKPNTNLEELKIQCYMGVGFPSWMAEEQY 759
>06_03_0801 + 24714725-24715501
Length = 258
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = -3
Query: 425 RGPRAGALGVAADGAEPPNALAAGARSGDTPQRVNWAILLPIAPRPAHPALSPS*TPLHH 246
R P A A VA D ++ AA A S PQ V LP+ P HP P+ P H
Sbjct: 191 RLPLADAADVA-DVKPDLSSAAAAATSTSAPQEVQQQ-QLPLPPSSHHPQAMPATYPDHR 248
Query: 245 A 243
+
Sbjct: 249 S 249
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = -3
Query: 296 PRPAHPALSPS*TPLHHAAHLQENWTLCESVAHCCPNNNGNG 171
PRP HP SPS P H CES A CC N G
Sbjct: 90 PRPPHPPPSPS--PCVHP-------PCCESAAGCCCNGCSGG 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,890,991
Number of Sequences: 37544
Number of extensions: 563368
Number of successful extensions: 2212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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