Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N10
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.46 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   7.4  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   7.4  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
 Frame = +2

Query: 404 GVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHS 583
           G A +V +   + H   A   +  +SP   PNA   N    G   + +  +   LS+  S
Sbjct: 409 GEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSS--S 466

Query: 584 DVINRNDYSAGGKLNLF---RSPSSSLXFNAGLRS-----SIRLFTDLRGSP 715
            + +   +S+GG  + F   R P+ S+     +RS       + F+D+R  P
Sbjct: 467 GLFDNGLFSSGGLSSNFSSLRRPAPSMHLADSIRSLRGLNDSKAFSDIRSMP 518


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 628 PVPIAVQLARXQRRLKKFDTPFYRSSWEP 714
           P P  V+++R + R   F+T  + S WEP
Sbjct: 7   PKPWIVKISRSRNRPYFFNTETHESLWEP 35


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 527 GVDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFRSPSSSLXFNAGLRSSIRLFTDL 703
           G+ + F+  +   + +A ++    +++      N+ + P   L  N+G R S +LF DL
Sbjct: 162 GLAFRFQHALVIGVQSATNNACVEHEFEITIVPNVQQQPELPLGKNSGNRQSSKLFADL 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,349
Number of Sequences: 5004
Number of extensions: 45450
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)