Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    31   0.21 
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    29   0.86 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   3.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   6.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.1  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    26   8.1  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    26   8.1  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 419  CSAGRVCEINEHGDAMCNCIKDCPYETD---SRTHGVHKLQRN 538
            C+A R+C++ E       C+ DC   T    S+  GV  LQ+N
Sbjct: 974  CTASRICKVREIASLSLTCLLDCSKMTTFIVSQLKGVAGLQQN 1016


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 625 TWWYCGP--RH*SELSRHKHRWRYTSQSD 545
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 431 RVCEINEHGDAMCNCIKDCPYETDSRTHGVHKLQRNLA 544
           + C  NE+G   C C    P+E+ +    V+KL +  +
Sbjct: 27  KTCVSNENGCINCRCSPSEPHESANVDESVNKLSKTFS 64


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 709  PACXRGKSDISLSVQSGISRHVP*YSI*TWWYCGP 605
            P C     DI  S+    SR +  ++I  WW  GP
Sbjct: 1627 PLCNFESDDIQYSIDVVYSRKLKEHNIILWWNKGP 1661


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 324 FCLMVSLLVQALRHSVLDVFSLRD 253
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 717 KPVPHAXGGSQTSRFQCSQAFL 652
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 717 KPVPHAXGGSQTSRFQCSQAFL 652
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,942
Number of Sequences: 5004
Number of extensions: 52235
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)