Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_N08
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0344 + 22540436-22540737,22541304-22543545 31 0.91
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 1.6
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 2.1
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 29 6.4
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 29 6.4
03_02_0520 + 9092020-9092079,9092253-9093047 29 6.4
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 8.5
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284... 28 8.5
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 622 TFKSSITERAEKCLTALKARCLTSPXRMR 708
T +S ERAE+C + L RC+ P R R
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRPARTR 327
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/88 (20%), Positives = 37/88 (42%)
Frame = +3
Query: 441 KSTNTETPCVTASRTVPTRQTPERMVCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYH 620
++ N PC + S P + PE + +N N Q+ C R++ C D + +
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCH-DREQNSCHDRESRMSASIGN 1361
Query: 621 HVQIEYYGTCREMPDCTESEMSDFPRSH 704
++ + +E+ +S + P+ H
Sbjct: 1362 VKLMDKHEVSKELQCTADSRLDALPKDH 1389
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -3
Query: 366 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 193
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 192 VPTP 181
+P
Sbjct: 69 QSSP 72
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 234 LRRWTFSSRGADPAVPTPHTTSVGGANDRDH*GQRKKTLQ 115
LR+ T S+ A PA+P+ TS + DH G +K LQ
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQ 989
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 516 VCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SD 689
+CTN + DC R C D+ QCRG + + E G C ++ + +E+E+ SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287
Query: 690 F 692
F
Sbjct: 288 F 288
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 279 VLDVFSLRDVPAAELLRRWTFSSR 208
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 342 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 208
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>01_06_1356 +
36627590-36627676,36627869-36628020,36628224-36628471,
36628585-36628707,36628797-36629842
Length = 551
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 428 GRVCEINEHGDAMCNCIKDCPYETDSRTHGVHKLQRNLAIGLRSIPPAMLMP 583
G E+ E + + + D PY HGV++L+ G I + P
Sbjct: 53 GPTIEVTEGDTLVVHAVNDSPYPLSLHWHGVYQLRSGWNDGANKITQCPIQP 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,834,497
Number of Sequences: 37544
Number of extensions: 462920
Number of successful extensions: 1333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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