Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N07
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    55   6e-08
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    36   0.037

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/66 (40%), Positives = 35/66 (53%)
 Frame = +1

Query: 67  MKXGLCAYSGXKXXPGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 246
           MK   C YSG K  PGHGK +V+ DGK   FL+ K      +RRNPR        + + +
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 247 KGPRGR 264
           KG  G+
Sbjct: 61  KGTHGQ 66


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 67  MKXGLCAYSGXKXXPGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPR 207
           M+   C +      PGHG   V+ D   F F  S+C      ++NPR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,317,694
Number of Sequences: 27780
Number of extensions: 146361
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)