Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_N06
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 34 0.18
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 31 0.94
04_01_0180 + 2034021-2034023,2034741-2035088 31 1.6
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 30 2.2
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 30 2.9
05_04_0444 + 21288806-21289054,21289177-21289248,21290137-212901... 29 3.8
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 29 5.0
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 6.6
07_03_0147 - 14437982-14438390,14438521-14438576 29 6.6
07_01_0494 + 3720509-3720877 29 6.6
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728 28 8.7
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 8.7
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 287 QGLEGRLRVRAATAQRLRQESPGXRSETRT-ARPREALEQSRQNIERTXEELRKAHPDV- 460
+ L G+L+ +++ L ++ + E T A + + + QN+E EL K H D+
Sbjct: 523 ESLRGKLKELEESSEALYSQNSALQHEKSTLACQVDRISDTLQNLEAHYAELEKRHSDLQ 582
Query: 461 EKNATALRE--KLQAAVQNTVQESQKLAKKVSSNVQETNEKL 580
E+ + L E KLQ ++ +E L S + +EK+
Sbjct: 583 EEKGSVLDEVIKLQEQIRFERKEHNDLEHSRKSQLDALHEKI 624
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.5 bits (68), Expect = 0.94
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 394 SLPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 269
+L WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 107 TLRWPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 389 EALEQSRQNIERTXEELRKAHPDVEKNATALREK---LQAAVQN 511
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 380 RPREALEQSRQNIERTXEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 559
R +A+E ++ E+L A+PDVE L E L+ A ++ ++ + L +N
Sbjct: 522 RVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSLENLFVTNS 581
Query: 560 QETNEKLAPRLITITI 607
Q + R I + I
Sbjct: 582 QRVKKDAGRRFIHLLI 597
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 386 REALEQSRQNIERTXEELR-KAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 562
++ +QS ERT E + KAH ++ K E +QAA +QE Q VQ
Sbjct: 416 KQDAKQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQFPMSLADQKVQ 475
Query: 563 ET 568
T
Sbjct: 476 AT 477
>05_04_0444 +
21288806-21289054,21289177-21289248,21290137-21290166,
21290983-21291081
Length = 149
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = +2
Query: 269 GRTGLQQGLEGRLRVRAATAQR--LRQESPGXRSETRTARPREALEQSRQNIERTXEELR 442
G G G GR R A R ++++ ++ AR RE + +E EL
Sbjct: 38 GGRGGGGGGRGRKRTLMDPADRAAMQRQKRMIKNRESAARSRERKQAYIAELEAQVAELE 97
Query: 443 KAHPDV-----EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETN 571
+ H + EKN L+EK +Q Q + +K + +++ TN
Sbjct: 98 EEHAQLLREQEEKNQKRLKEKWHVFMQIKEQAVAVVIRKKTQDLRRTN 145
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 335 LRQESPGXRSETRTARPREALEQSR-QNIERTXEELRKAHPDVEKNATALREKLQAAVQN 511
L + R R R LE R Q ++RT E+L + + ++ LRE + A Q
Sbjct: 632 LDMKKEAEEKHARALRIRSQLESERVQRLQRTSEKLNRVNEWQAVRSSKLREVMNARHQR 691
Query: 512 TVQESQKLAKKVSSNVQETNEKL 580
+ + +V+ + + K+
Sbjct: 692 SESRHEAYLAQVAKRAGDESTKV 714
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 485 EKLQAAVQNTVQESQKLAKKVSSNVQETN 571
EKLQ + + QE+Q+L KK+SS ++ ++
Sbjct: 153 EKLQKEISSLSQENQELKKKISSVLENSD 181
>07_03_0147 - 14437982-14438390,14438521-14438576
Length = 154
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 436 LLXRA--LDVLPRLFQSLPWPCRSRLRALPWR 347
LL RA L LP Q +PWP SRL + W+
Sbjct: 119 LLPRASVLAALPTTTQWIPWPAASRLGSRAWQ 150
>07_01_0494 + 3720509-3720877
Length = 122
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 80 LRTQSLDRYIMAAKFVVLFACIALAQGAMVRR 175
+ T S R + AA F VL C+A A A VRR
Sbjct: 1 MATISALRLLQAAAFAVLLVCLAPATAASVRR 32
>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
Length = 316
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 449 HPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPRLITITI 607
HP+ +N ++ +L+ QES+ + K+ +E + P +T T+
Sbjct: 187 HPEPAENESSASAELEVPEPEPEQESEPVVKQEEEQKEEQKAVVEPAAVTTTV 239
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +2
Query: 329 QRLRQESPGXRSETRTARPREALEQSRQNIERTXEELR--KAHPDVEKNATALREKLQAA 502
QR++ + E+ EALEQ R+ I E+ KA E+ L +K A
Sbjct: 958 QRMQDVTAMQERESAKKAVEEALEQEREKISSLTSEIEGLKALLVAEQEENDLTKKAHAN 1017
Query: 503 VQNTVQESQKLAKKVSSNVQETNE 574
Q +E K + +++ ++
Sbjct: 1018 AQERNEELSKEVEDADGKIKQLSD 1041
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,460
Number of Sequences: 37544
Number of extensions: 224379
Number of successful extensions: 1046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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