Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_N05
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 246 1e-65
07_01_0756 + 5819367-5820038,5820847-5821005 243 1e-64
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 59 4e-09
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 31 1.6
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 30 2.7
05_03_0096 + 8356109-8356231,8356291-8356605 30 2.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.8
02_02_0400 + 9836045-9837115,9837474-9838577 29 4.8
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 8.3
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 246 bits (603), Expect = 1e-65
Identities = 109/146 (74%), Positives = 132/146 (90%)
Frame = +3
Query: 216 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 395
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 396 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGXK 575
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG K
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 576 IGKPHTVPCQVTGKCGSVPVRLIPAP 653
IG+PHTVPC+VTGKCGSV VR++PAP
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAP 182
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 243 bits (595), Expect = 1e-64
Identities = 109/146 (74%), Positives = 131/146 (89%)
Frame = +3
Query: 216 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 395
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 396 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGXK 575
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG K
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 576 IGKPHTVPCQVTGKCGSVPVRLIPAP 653
IGKPHTVPC+VTGKCGSV VR++PAP
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAP 185
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 435 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGXKIG-KPHTVPCQVT 611
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV C+V
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 612 GKCGSVPVRLIPAP 653
K GSV VR++ P
Sbjct: 57 DKYGSVTVRMMLPP 70
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 542
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 543 LPV 551
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 608 DLARDGVWLSDLXTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 459
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 599 RDGVWLSDLXTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 441
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>05_03_0096 + 8356109-8356231,8356291-8356605
Length = 145
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 477 VKCSKEVATAIRGAIILAKLSV-LPVRRGYWGXKIGKPHTV-PCQVTGKCGSVPVRLIPA 650
V CS A +R A L + PVR + + + C CG+VP P
Sbjct: 10 VLCSSACAGRLRAAACLPRPPHRCPVRPREIKSSLNLRYMIITCGYLATCGAVPCTAAPE 69
Query: 651 PSWYW 665
P+WY+
Sbjct: 70 PNWYY 74
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 497 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 381
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 564 WGXKIGKPHTVPCQVTGKCGSVPVRLIPAPSW--YWN 668
W K+ P T S P+ ++P P+W +WN
Sbjct: 207 WSGKMATLEFSPSPATPTLASAPLAMVPCPAWCNHWN 243
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 94 SAIVERWALIDSQATKIKILRIPYSES 14
S + W++ID+ AT +K++R YSE+
Sbjct: 783 SNVCINWSVIDAAATAVKLMRRIYSEN 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,102,357
Number of Sequences: 37544
Number of extensions: 437366
Number of successful extensions: 1173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -