Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N04
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    29   1.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.8  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    26   7.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   7.7  

>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 622 QHLSLXPEQYYSFYYLSYHSCLLR*YLLVLHHFPLHC 512
           QH+   PEQ +  Y+   +  + R + LV+ HF L C
Sbjct: 138 QHVGNNPEQLFIDYFEHQYDLMQRLHPLVIGHFDLIC 174


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 423 IKIYAVYSIV*ILFLINGCLIFIWLGFH**FNSFYIRIFYVLVFTLIGSFARFN 262
           +K Y  + I   LF+IN  LI +   F   ++ FY  +FY+L+   I  F   N
Sbjct: 160 LKNYIAFPIC--LFVINHILILLGY-FQCSYSVFYASVFYILLGVFIRVFYLVN 210


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 676 ILLTSLCERPXHVLYIENQHLSLXPEQYYSFY 581
           +LLT  C+ P  +  I   H S    Q Y FY
Sbjct: 95  LLLTLKCKYPKEMTLIRGNHESRQITQVYGFY 126


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +1

Query: 442 KTPTSPSKNAKMEEDXXNQVILQ-----NNVEGNDEVQVDTIEADKSDMTSSRRSSTAP 603
           KT +S S  +KM      Q I        N EG  +V    +++DK++   +  SS+AP
Sbjct: 83  KTGSSSSPASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAP 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,721
Number of Sequences: 5004
Number of extensions: 38604
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)