Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N04
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082...    29   6.2  
03_05_0347 + 23341582-23341658,23341786-23341852,23343426-23343512     28   8.1  

>06_03_1276 -
           28907726-28907842,28908012-28908062,28908146-28908254,
           28908345-28908430,28908537-28908650,28908731-28908790,
           28909088-28909303,28909401-28909514,28910632-28910853,
           28910946-28911050,28911136-28911276,28911368-28911472,
           28911538-28911645,28911753-28911911,28912060-28912140,
           28912219-28912330,28912433-28912515,28912631-28912669,
           28913061-28913126,28913601-28913643,28913969-28914036,
           28914264-28914323,28914409-28914529,28915167-28915267,
           28915354-28915494
          Length = 873

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 314 EFFMYLFLLSSAVSPDLILSKSXSLKPVNCDMFHLFLYRYVRVM 183
           ++   L++L+ A+ P ++L+    LKP++  +   + Y Y   M
Sbjct: 805 KYHYMLYILTLAMQPRMLLTVDEDLKPLSVPLIFAYAYAYALSM 848


>03_05_0347 + 23341582-23341658,23341786-23341852,23343426-23343512
          Length = 76

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 454 SPSKNAKMEEDXXNQVILQNNVEGNDEVQV-DTIEADKSDM 573
           +P+K A  EE        +NNV   +E+Q+ D +EAD  D+
Sbjct: 35  TPNKWAPSEEGREKDDASKNNVVSVEELQICDELEADNEDL 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,689
Number of Sequences: 37544
Number of extensions: 216400
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)