Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N04
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    30   2.4  
AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical...    28   7.3  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    28   7.3  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 429 TFIKIYAVYSIV*ILFLINGCLIFI 355
           +FI++Y VYS++ IL+L+N    F+
Sbjct: 177 SFIRMYMVYSVIKILYLVNAIAQFV 201


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 323 FILEFFMYLFLLSSAVSPDLILSKSXSLKPVNCDMFHLFLYR 198
           F + FF  +F + S VSP      S +  P+NC +   FLY+
Sbjct: 288 FFINFFFLIFSIWSLVSPG-----SLTFTPINCLLIFCFLYQ 324


>AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical
           protein Y57A10A.14 protein.
          Length = 204

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 481 EDXXNQVILQNNVEGNDEVQVDTIEAD-KSDMTSSRRSSTAPDXVRGVDFQYTEHXLASH 657
           E+  N+++     EGN  +    I+ D +   T SRRS+ + +  +    +YT H    H
Sbjct: 96  EEDYNEIV--GGAEGNSLLNEHKIQIDLQPSSTGSRRSTESYELCKSCTSRYTRHRTTYH 153


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 347 VFIDNLTRFILEFFMYLFLLSSAVSPDLILSKSXSLKPVNCDMFHLFLYRYVRVM 183
           + I +   F   FF  LFLL+   S   I+     L P N ++ ++F+   ++ M
Sbjct: 580 ILISSTIYFFRNFFKVLFLLAGISSWTAIIDALILLVPTNVELNYMFIQLCLKPM 634


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 448 PTSPSKNAKMEE----DXXNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPDXVR 615
           P    KN+  EE       N+V  Q  + GNDEV+ +  +  + D+   +++++  D  +
Sbjct: 52  PVKDEKNSNSEEKKTTSSNNEVPPQKKLIGNDEVKKEK-KKSEDDLLDVKKTASKEDDKK 110

Query: 616 GVDFQYTEHXLASHKVK 666
            +D +     L+  K++
Sbjct: 111 RMDKKDPSKKLSKEKLR 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,092
Number of Sequences: 27780
Number of extensions: 220239
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)