Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_N03
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 105 5e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 94 1e-19
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 31 1.2
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 5.0
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 29 6.6
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 105 bits (252), Expect = 5e-23
Identities = 66/159 (41%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Frame = +3
Query: 84 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 263
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 264 RRFNGGVGRCAQAK-QFGTTQGSLAQEIRRIPLAVIEER*IKR*QQNFGRGQASHRPHSG 440
RR+ GGVGR AQAK + QG + R L +++ + + H
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLD-VDTLYVSHIQ 119
Query: 441 KSRALPTQTYIPXLTVASTPTCRLPGHIEVCLSEREDAV 557
++A + P P HIE+ LSE+E+ V
Sbjct: 120 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 158
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = +1
Query: 328 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 477
RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYR
Sbjct: 83 RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYR 132
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 482 HGRINPYMSSP 514
HGRINPYMSSP
Sbjct: 134 HGRINPYMSSP 144
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 94.3 bits (224), Expect = 1e-19
Identities = 67/173 (38%), Positives = 91/173 (52%), Gaps = 15/173 (8%)
Frame = +3
Query: 84 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 227
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 228 KNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGSLAQEIRRIPLAVIEER*IKR*QQNF 404
++VI K+ IPFRR+ GGVGR AQ K + QG + R L +++ +
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 405 GRGQ--ASHRPHSGKSRALPTQTYIPXLTVASTPTCRLPGHIEVCLSEREDAV 557
SH +++ +TY + P P H+E+ LSE+E+AV
Sbjct: 121 DVDNLFVSH-IQVNQAQKQRRRTYRAHGRI--NPYMSSPCHVELILSEKEEAV 170
Score = 75.4 bits (177), Expect = 6e-14
Identities = 36/59 (61%), Positives = 43/59 (72%)
Frame = +1
Query: 301 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 477
+S + + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYR
Sbjct: 86 KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYR 144
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 482 HGRINPYMSSP 514
HGRINPYMSSP
Sbjct: 146 HGRINPYMSSP 156
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/83 (19%), Positives = 38/83 (45%)
Frame = +3
Query: 27 REFLKICLFLSYFLLREIIMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 206
+++ +I F ++ ++ ++ + + + K C RGS +R+H KN + P
Sbjct: 512 QDYARIFAFDNFTRTQKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPS 571
Query: 207 RRAVRYLKNVIEKKECIPFRRFN 275
RR + +++ + I F+
Sbjct: 572 RRLPVVVSGLLQHESKISVLHFS 594
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 337 KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 462
K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 400 FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 275
F C RL +S+ RG+ I WA+ V P A +P P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,419
Number of Sequences: 37544
Number of extensions: 351550
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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