Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   4.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 782 GGGGGGVXAGXXGPNRPPGXGKIXGXXXXGXXVXXRGXXG 663
           GGG GG   G  GP  PPG G   G    G      G  G
Sbjct: 187 GGGFGGFGGGSGGP--PPGPGGFGGFGGFGGEGHHHGGHG 224


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect(2) = 2.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 754 PAXTPPPPPP 783
           PA  PPPPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 21.4 bits (43), Expect(2) = 2.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 766 PPPPPPXXXA 795
           PPPPPP   A
Sbjct: 948 PPPPPPLVSA 957


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 812 PPSPXPXXXXXXPPXPXPPXP 874
           PP P P      PP P PP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 4.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 754 PAXTPPPPPP 783
           P   PPPPPP
Sbjct: 5   PPGNPPPPPP 14



 Score = 21.8 bits (44), Expect(2) = 4.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 766 PPPPPPXXXAXXLXXAPXP 822
           PPPPPP          P P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,674
Number of Sequences: 5004
Number of extensions: 24309
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)