Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M24
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.027
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.027
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 855 PXPXPXNXXXXPPRXXPXXPXSXPPPPXPP 944
           P P P      P R  P  P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.4 bits (53), Expect = 0.76
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 633 PPPXXXXPXXXSGPPPPPXXXXPPXPPXXXPP 728
           P P         G PP P    PP  P   PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 533 PPPPPXXXXXXPPXXXPXPPXXGXPPFXGRXTXPP 637
           P P P      P    P  P  G PP  G    PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP-GGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 926  PPPPPPPP 949
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 924  PPPPXPPP 947
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 932  PPPPPPXP 955
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 562  PXPPXPPPS 588
            P PP PPPS
Sbjct: 1355 PPPPPPPPS 1363


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 926 PPPPPPPP 949
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 926 PPPPPPPPXP 955
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 913 PXPXPPPPXP 942
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 926 PPPPPPPPXP 955
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 562 PXPPXPPPS 588
           P PP PPPS
Sbjct: 341 PAPPPPPPS 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 926  PPPPPPPP 949
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 266 RQSGPGDRGPR-FG*SYRKMIFKTCAIN 346
           R  GPG +GPR F  S+R      C ++
Sbjct: 56  RNPGPGSKGPRDFPRSHRFKSLPRCQLS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,842
Number of Sequences: 438
Number of extensions: 8703
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)