Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_M22
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.12
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.21
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.48
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.48
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.48
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 5.9
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +1
Query: 688 GXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXPXXPP 867
G PPP P P P P P P P P PP P PP
Sbjct: 134 GGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPP 193
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = +2
Query: 686 GGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPPXXPXXXPX 865
GG P P P P P P P P P P PP P P
Sbjct: 134 GGSSPPPPPPPRVPRTPPPRSPPPRRP-PMTPPSPQRRPPRTPPSPEPRNPPRTP-PSPI 191
Query: 866 PXXXPR 883
P PR
Sbjct: 192 PPPPPR 197
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +2
Query: 716 PPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPPXXPXXXPXPXXXP 880
PP P P P P P P P PPP P P P P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +1
Query: 700 PPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXPXXPP 867
PPP P P P P P P PPP P P P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +1
Query: 700 PPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXPXXPPXXXX 879
PPP P P P P P P P PPP P P P
Sbjct: 27 PPPCPPPPPPMCAPPPL-PCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYS 85
Query: 880 P 882
P
Sbjct: 86 P 86
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/74 (27%), Positives = 20/74 (27%)
Frame = +2
Query: 659 PXXRXPPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPP 838
P PP GG P P PP P P P P P P PP
Sbjct: 731 PPGGLPPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 839 PXXPXXXPXPXXXP 880
P P P
Sbjct: 788 PPPGMFAPMAPVIP 801
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +2
Query: 674 PPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPPXXPX 853
PP GG P P P P P P P PPP P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 854 XXPXPXXXP 880
P P P
Sbjct: 767 GCPPPPPPP 775
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Frame = +1
Query: 658 PXXAXXPXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPP 837
P P G PPP P P P P P P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 838 P------XXPXPXXPPXXXXP 882
P P P PP P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +1
Query: 676 PXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXP 855
P G PPP P P P P P P PPP P P
Sbjct: 707 PPITGGPPPPPGLPPITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 856 XXPPXXXXP 882
P P
Sbjct: 766 GGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/74 (27%), Positives = 20/74 (27%)
Frame = +2
Query: 659 PXXRXPPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPP 838
P PP GG P P PP P P P P P P PP
Sbjct: 731 PPGGLPPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 839 PXXPXXXPXPXXXP 880
P P P
Sbjct: 788 PPPGMFAPMAPVIP 801
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +2
Query: 674 PPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPPXXPX 853
PP GG P P P P P P P PPP P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 854 XXPXPXXXP 880
P P P
Sbjct: 767 GCPPPPPPP 775
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Frame = +1
Query: 658 PXXAXXPXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPP 837
P P G PPP P P P P P P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 838 P------XXPXPXXPPXXXXP 882
P P P PP P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +1
Query: 676 PXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXP 855
P G PPP P P P P P P PPP P P
Sbjct: 707 PPITGGPPPPPGLPPITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 856 XXPPXXXXP 882
P P
Sbjct: 766 GGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/74 (27%), Positives = 20/74 (27%)
Frame = +2
Query: 659 PXXRXPPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPP 838
P PP GG P P PP P P P P P P PP
Sbjct: 314 PPGGLPPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Query: 839 PXXPXXXPXPXXXP 880
P P P
Sbjct: 371 PPPGMFAPMAPVIP 384
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +2
Query: 674 PPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPPXXPX 853
PP GG P P P P P P P PPP P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 854 XXPXPXXXP 880
P P P
Sbjct: 350 GCPPPPPPP 358
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Frame = +1
Query: 658 PXXAXXPXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPP 837
P P G PPP P P P P P P PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Query: 838 P------XXPXPXXPPXXXXP 882
P P P PP P
Sbjct: 358 PPPGGFKGGPPPPPPPGMFAP 378
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +1
Query: 676 PXXXGXXXPPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXP 855
P G PPP P P P P P P PPP P P
Sbjct: 290 PPITGGPPPPPGLPPITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Query: 856 XXPPXXXXP 882
P P
Sbjct: 349 GGCPPPPPP 357
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +2
Query: 668 RXPPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPP-- 841
R PP P P PP P P P P P P P PPP
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGP----PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM 341
Query: 842 XXPXXXPXP 868
P P P
Sbjct: 342 RYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +2
Query: 668 RXPPXXGGXXXPXPXXPPXXXXPXPXXXXPXXPXXXXXXXPXXXXPXXXXXXXPXPPP-- 841
R PP P P PP P P P P P P P PPP
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGP----PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM 351
Query: 842 XXPXXXPXP 868
P P P
Sbjct: 352 RYPGGMPPP 360
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Frame = +1
Query: 646 PXXXPXXAXXPXXXGXXXPPPXXPXXXXX----AXPXXXXPXXXXPXXXXXPXXXPXXXP 813
P P A P PP P A P P P P P
Sbjct: 78 PAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPP 137
Query: 814 XXXXPXPPPXXPXPXXPP 867
P PPP P P P
Sbjct: 138 PPHYPPPPPHYPPPPPAP 155
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/52 (26%), Positives = 14/52 (26%)
Frame = +1
Query: 700 PPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXP 855
PPP P P P P P P PPP P P
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPP 816
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/52 (26%), Positives = 14/52 (26%)
Frame = +1
Query: 700 PPPXXPXXXXXAXPXXXXPXXXXPXXXXXPXXXPXXXPXXXXPXPPPXXPXP 855
PPP P P P P P P PPP P P
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPP 816
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,043,991
Number of Sequences: 27780
Number of extensions: 234708
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -