Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M19
         (1187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.72 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +2

Query: 449 PPXXXPPKKKKXKXXFPPXKKKNXPXXLXCXXKKXAPPPPPXXKKK----XXXXXXXFXX 616
           P    P      K   PP   +     L    K+  PPPPP  + +              
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSL 336

Query: 617 PPPPP 631
           PPPPP
Sbjct: 337 PPPPP 341



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 191 PPPXRXGVSXKXPXKPXXPXKXAXPPPXPXXTP-XGKKP 304
           PPP R   +   P  P    + A PPP P   P  G++P
Sbjct: 340 PPPPRSNAAGSIPLPP--QGRSAPPPPPPRSAPSTGRQP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.145    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,336
Number of Sequences: 5004
Number of extensions: 30211
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)