Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    29   1.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   3.7  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    27   3.7  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   6.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.4  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    26   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 260 PPPGKFMSPPDHSSPLPNTSTS 195
           PPP    S    SSPLP+TSTS
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTS 338



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 257 PPGKFMSPPDHSSPLPNTSTS 195
           PP    S   +SSPLP TSTS
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTS 228



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 257 PPGKFMSPPDHSSPLPNTSTS 195
           PP    S   +SSPLP TSTS
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTS 284


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 274 LLKNRLEKLMKADNKEKIILFTDSYDVMFLXEFR*DCKE 390
           +L N L+  MK ++ EK+IL  ++Y  +FL E +  C+E
Sbjct: 853 MLANELQ--MKQEDLEKVILELEAYKEIFLEEKQIPCEE 889


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
 Frame = +2

Query: 443 WPDAKLATQYPNIEVVSPYLNS---GGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLD 613
           +P   L  +  NI  V  Y N+      I   P   E++N  P    DD  + + +I   
Sbjct: 385 YPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLP---PDDWIISHEEIKKR 441

Query: 614 KDLRESLXITLDHKSXIFQNLNGALSDVQLRANTTEEWPYIENV 745
           +DLR  L IT+D ++   ++L+ A+S   L   T E   +I +V
Sbjct: 442 RDLRNELIITIDPETA--RDLDDAVSCRALDNGTYEVGVHIADV 483


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 497 YLNSGGFIGYLPEIYEIINSNPIKDKDDDQLY 592
           +L +G F+GY P +   I +N IK KD  + Y
Sbjct: 147 FLETGPFVGYYPSVVSKIRAN-IKLKDVGENY 177


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +2

Query: 329 YFSLTVMTSCSWXNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVV 490
           +FS  +  +  W  L ++V+  ++     V      FCW    L T    I+ V
Sbjct: 102 FFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFCWGAKVLVTYPATIDFV 155


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 315 VVSFHQLLKPVFQKNYFLSTTGEV 244
           V + H++L P+FQKN+      E+
Sbjct: 285 VQNIHKILLPIFQKNFLTGFPAEI 308


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 605 YLDKDLRESLXITLDHKSXIFQNLNGALSDVQLRANTTEE 724
           Y+D ++ E+   T D+     Q+LNG +S++   A    E
Sbjct: 9   YVDSNMNETQNDTTDNFDAEMQDLNGYISEIVDEARNVSE 48


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 244 SCHHLTTLHPCPIPR 200
           +C HL  LHP  IPR
Sbjct: 125 ACQHLAKLHPSEIPR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,459
Number of Sequences: 5004
Number of extensions: 67508
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)