Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M17
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    73   6e-14
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    72   1e-13

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 48/135 (35%), Positives = 71/135 (52%)
 Frame = +2

Query: 74  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 253
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAP  P    +     
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 254 SFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVLHARALQSLEALKLVEKVQDG 433
           +  I+    +   RL        N      H   G  +V   + +QSLE + ++EK  +G
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSV-QRKVVQSLEKIGVLEKSDNG 119

Query: 434 GRILTTQGRRDLDRI 478
           GR ++ QG+RDLDRI
Sbjct: 120 GRRISQQGQRDLDRI 134



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 27/51 (52%), Positives = 34/51 (66%)
 Frame = +1

Query: 229 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARK 381
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRK 102


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 47/135 (34%), Positives = 71/135 (52%)
 Frame = +2

Query: 74  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 253
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAP  P    +     
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 254 SFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVLHARALQSLEALKLVEKVQDG 433
           +  I+    +   RL        N      H   G  +V   + +QSLE + ++EK  +G
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSV-QRKVVQSLEKIGVLEKSDNG 119

Query: 434 GRILTTQGRRDLDRI 478
           GR ++ QG+RDLDRI
Sbjct: 120 GRRISQQGQRDLDRI 134



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 27/51 (52%), Positives = 34/51 (66%)
 Frame = +1

Query: 229 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARK 381
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRK 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,774
Number of Sequences: 5004
Number of extensions: 37373
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)