Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_M15
(941 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.18
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.41
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.7
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 372 GXGGGPG-FXGXPXGXGXXRXKRPXGXXFFXXXGGGGGGG 488
G GGGPG F G P G G G F GG GGG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 487 PPPPPPPXXXKKXNPXGLFXRXXPXPXGXPXKPGPPPXP 371
PPPPPP P + P P P GPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPI-----PVPPPAPIMGGPPPPP 765
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -1
Query: 488 PPPPPPPXXXKKXXPXXPFXXXXXXXXGGXXKTXAPPXPPK 366
PPPPPPP P P G AP P+
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPE 802
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 490 PPPPPPPPXXXKK 452
PPPPPPPP +K
Sbjct: 1095 PPPPPPPPAEVEK 1107
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 490 PPPPPPPPXXXKK 452
PPPPPPP KK
Sbjct: 1096 PPPPPPPAEVEKK 1108
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 490 PPPPPPPPXXXKKXNP 443
PPPPPPPP P
Sbjct: 9 PPPPPPPPGFEPPSQP 24
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 488 PPPPPPPXXXKKXXPXXP 435
PPPPPPP KK P
Sbjct: 24 PPPPPPPGYVKKRKNKTP 41
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 490 PPPPPPPPXXXKKXN 446
PPPPPPP K+ N
Sbjct: 24 PPPPPPPGYVKKRKN 38
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 488 PPPPPPPXXXKKXXPXXP 435
PPPPPPP P P
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 490 PPPPPPPP 467
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2
Query: 490 PPPPPPPPXXXKKXNPXGLFXRXXPXPXGXPXKPGPPP 377
PPPPPPP + P G P P PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLP-----PPPPPP 343
Score = 25.8 bits (54), Expect = 8.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 489 PPPPPPPR 466
PPPPPPPR
Sbjct: 337 PPPPPPPR 344
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -2
Query: 484 PPPPPPXXXKKXNPXGLFXRXXPXPXGXP 398
PPPPPP K P P G P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.154 0.533
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,940
Number of Sequences: 5004
Number of extensions: 21415
Number of successful extensions: 291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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