Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M08
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...    87   2e-17
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    33   0.20 
Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    30   2.4  
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   9.8  

>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +3

Query: 144 MVVTADVYLPEDSELTV-QEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCI 320
           M +T D + P D ELTV QE+ LS   L + + ++ K+CE   NE+ML R+E  DPR  +
Sbjct: 1   MSITKDTHFPSDEELTVPQEITLSTPWLKSIAPYMAKHCEKEANEFMLRRKEAEDPRAVL 60

Query: 321 NEGKAVTACTLEFFKKVKKTCLAEFNQYSNCLDKSSGDYAFRXLPEDSRCF*SVHA*ESK 500
            EG A+TAC + F + +K++CL +  + + C+D+SS         +D +   +       
Sbjct: 61  KEGAALTACGVNFLQSLKRSCLPQTQKLAECVDQSSAKLYMSKCHDDQKELDACVEANLN 120

Query: 501 LTSPWLWIF 527
           LT P L  F
Sbjct: 121 LTRPKLGYF 129



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 451 CRKTQGVFDQCMLENLNLPRPGFGYFCEARVHDTKRPKP 567
           C   Q   D C+  NLNL RP  GYF +  V+D+    P
Sbjct: 104 CHDDQKELDACVEANLNLTRPKLGYFSKLHVYDSATAAP 142


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 276 YMLCRQEENDPRKCINEGKAVTACTLEFFKKVK 374
           Y++C  + N P  C+N G A+ +C  ++F+ +K
Sbjct: 146 YVICNYQLNVPYNCVNVGCAMNSCFRQYFRPLK 178


>Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical
           protein F40D4.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 276 YMLCRQEENDPRKCINEGKAVTACTLEFFKKVK 374
           Y++C  + N P  C+N G A+ +C  ++F   K
Sbjct: 149 YVICNYKLNIPYNCVNIGCAINSCYRQYFLSSK 181


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 276 YMLCRQEENDPRKCINEGKAVTACTLEFFKKVK 374
           Y  C  E   PR C+  G ++ AC+  F+ K K
Sbjct: 146 YYFCNFELTFPRNCLTIGCSINACSSRFWTKSK 178


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 207 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFKKVKKTCL 386
           ++GS L  GSF +G +C+ I   Y+L          C     ++ +   E+FKK + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164

Query: 387 A 389
           A
Sbjct: 165 A 165


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 207 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFKKVKKTCL 386
           ++GS L  GSF +G +C+ I   Y+L          C     ++ +   E+FKK + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164

Query: 387 A 389
           A
Sbjct: 165 A 165


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 335 RLTLVDTFSRIILFLTTQHIL-IVNGFTIFSQMKGTS 228
           R   V TFS  ++ L TQ+++ +V GF ++ +++G +
Sbjct: 195 RWNSVSTFSMFVVILLTQYVICLVCGFIMYRRIEGNA 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,661
Number of Sequences: 27780
Number of extensions: 307560
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)