Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M08
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 163 SIYPKIQS*PSKRSIYLDPLYMLVPFIWEN 252
           S+Y  + + P  + I L PLY + P+ + N
Sbjct: 143 SLYTAVITRPDTKFIQLPPLYEMCPYFFFN 172


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 163 SIYPKIQS*PSKRSIYLDPLYMLVPFIWEN 252
           S+Y  + + P  + I L PLY + P+ + N
Sbjct: 143 SLYTAVITRPDTKFIQLPPLYEMCPYFFFN 172


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 607 LAWRPGRQPSAPVEASVSWYRGLE 536
           ++W P  QP  P++    W   LE
Sbjct: 431 ISWNPLMQPKQPIKLFEQWKSILE 454


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 484 CTDQKHLESSGNXLKA*SPELLSKQLEY*LNSAKQVFFTFLKNS--NVQAVTALPSLIHF 311
           C+D K L+ SGN L +    L    L   L+  +     F   S  N+  +T L  + + 
Sbjct: 430 CSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGND 489

Query: 310 LGSFS 296
           +G+ S
Sbjct: 490 IGNLS 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,375
Number of Sequences: 438
Number of extensions: 4170
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)