Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_M04
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 178 1e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 102 8e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 93 4e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 76 8e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 50 4e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 49 8e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 6e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.095
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.51
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.67
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 8.3
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 178 bits (433), Expect = 1e-45
Identities = 98/177 (55%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Frame = +3
Query: 144 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGKAPPSGX*WSVWDRRTLM*EMRHRA 323
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS G+ G + + + + +
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 324 KXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSL-RAPLNPKANREKM 500
+ + + V+P + C L APLNPK+NREKM
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP--CLLTEAPLNPKSNREKM 119
Query: 501 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 671
TQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
Score = 145 bits (351), Expect = 9e-36
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = +2
Query: 254 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 433
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 434 PEEHPVLLTEGSPQPQGQQRE 496
PEEHP LLTE P+ + +
Sbjct: 98 PEEHPCLLTEAPLNPKSNREK 118
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +1
Query: 658 PTPSCRLDLAGRDLTDYLMKILTEXXYSFTXTA 756
P RLDLAGRDLTDYLMKIL E Y+F+ TA
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERGYTFSTTA 204
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 102 bits (244), Expect = 8e-23
Identities = 57/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 162 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGKAPPSGX*WSVWDRRTLM*EMRHRAKXXXXX 341
+ +DNGSG KAGFAGDD P+ +FP+ G+ S + + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 342 XXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRAPLNPKANREKMTQIMFET 521
+ I S + P PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 522 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 668
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +2
Query: 269 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 445
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 446 PVLLTE 463
P+LLTE
Sbjct: 107 PLLLTE 112
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 93.5 bits (222), Expect = 4e-20
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +3
Query: 435 PRNTQSCSLRAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 614
PR + P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 615 GVSHTVPIYEGYALPHAI 668
GV+H VP+YE L H +
Sbjct: 158 GVTHIVPVYESVVLNHLV 175
Score = 67.7 bits (158), Expect = 2e-12
Identities = 26/63 (41%), Positives = 45/63 (71%)
Frame = +2
Query: 290 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGS 469
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 470 PQP 478
P
Sbjct: 110 MNP 112
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 150 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 251
E A +V+DNG+G K G+A D+ PR FPS G+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 673 RLDLAGRDLTDYLMKILTEXXYSFTXTA 756
RLD+AGRD T YL+ +L Y+F TA
Sbjct: 177 RLDVAGRDATRYLISLLLRKGYAFNRTA 204
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 75.8 bits (178), Expect = 8e-15
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
Frame = +3
Query: 468 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 623
PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 624 HTVPIYEGYALPHAI 668
H +P+ EGY + +I
Sbjct: 192 HIIPVAEGYVIGSSI 206
Score = 60.1 bits (139), Expect = 4e-10
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 293 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGS 469
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 470 PQPQGQQRED 499
P + RE+
Sbjct: 133 LNPP-ENREN 141
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 162 LVVDNGSGMCKAGFAGDDAPRAVFPS 239
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 2e-09
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Frame = +3
Query: 147 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRG-KAPPSGX*WSVWDRRTLM*EMRHRA 323
EE+ +LV+D GS + G+AG+++P + PS G ++ +G V D L
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDE--LQIHAPIPG 65
Query: 324 KXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRAPLNPKANREKMT 503
T TW R G+ V+P + NP++ R+++
Sbjct: 66 MEVKNGKSNGIIQDWESTLYTWER-GLKEKLQ--VNPTEYAMMIT-EPSWNPQSVRQQIM 121
Query: 504 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILPSGL 683
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Query: 684 S 686
+
Sbjct: 182 A 182
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 427
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 428 VAPEEHPVLLTEGSPQPQGQQRE 496
V P E+ +++TE S PQ +++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQ 119
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +3
Query: 474 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 653
NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFV 168
Query: 654 L 656
L
Sbjct: 169 L 169
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 335 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQP 478
+ +K I +G V NWD +W + +L+ P EHP+L+TE P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 39.9 bits (89), Expect = 5e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 147 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 251
+EV+A+V+D GS + GF+G+D P+ V PS G+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 49.2 bits (112), Expect = 8e-07
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 453 CSLRAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSH 626
C NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 119 CMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASH 178
Query: 627 TVPIYEG 647
+P+ G
Sbjct: 179 VIPVLNG 185
Score = 39.9 bits (89), Expect = 5e-04
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 281 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 457
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 458 TEGSPQP 478
TE P
Sbjct: 121 TEPLANP 127
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 162 LVVDNGSGMCKAGFAGDDAPRAVF 233
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 486 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 647
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
Score = 25.8 bits (54), Expect = 8.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTF 412
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.095
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 535 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 669
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 532 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 669
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 532 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 669
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 532 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 669
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 669
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 669
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 523 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 669
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 556 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 660
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 514 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCRLDLAGR 693
S+H + +PS + P+ P ++ W P T PT P + + + P + +
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQPASNANQVITPV 302
Query: 694 DLTDY 708
++DY
Sbjct: 303 SISDY 307
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 556 PCSRCTRPVVPPVSCWTPATVSPTPCPST 642
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 532 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 639
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 189 TYRSHCLLPTRQLLRRTS*ISEI 121
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 606 SGDGVSHTVPIYEGYALPHAILPSGLSRSRPH 701
+G G+ H + + +GYA+P ++ + S S +
Sbjct: 157 AGRGIGHQIMVEQGYAMPGSMAVASDSHSNTY 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,048
Number of Sequences: 5004
Number of extensions: 75478
Number of successful extensions: 292
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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