Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M02
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 103  LYTYPENFRAYKALIAAQYSGTDVKVA 183
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
 Frame = +3

Query: 483 PTGRLKSTGRTSSHTHLPCYRENHT-CRCHCLQXHCCMLSSTC 608
           P G    +  T+      C  E H    CHC     C    TC
Sbjct: 719 PRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTC 761


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 281
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 558 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 472
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,400
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)