Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M01
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    30   0.37 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   3.4  

>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
 Frame = +1

Query: 124 DQQYVEIPLPDGIKNMSFKARGIFLTFWCFXLQTIYFGTAVLNDIIGTNATAPKN----- 288
           + +Y +  +    +  SF+ R + L      + T+Y   + L + + T  ++  N     
Sbjct: 536 ENEYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRLPENLPTTRSSSNNPIEAS 595

Query: 289 -PPLIRRVKDIVFSFGVHSSFICVCHILGPVL---DRRGPNSA--GPHPRGSTKLDKSRD 450
            PP  R  +DI  +     S     + +GP L    +R PN++    H R   K+  SR 
Sbjct: 596 RPPFSRDEQDISKANDFRVSASSAVYTVGPELLQRKKRDPNTSIRSIHEREQDKIIHSR- 654

Query: 451 AHNYC 465
           +H+ C
Sbjct: 655 SHSVC 659


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 413 IQEVLPNWINHGMHTTIVPFII 478
           I +++P W   G +TTI+P +I
Sbjct: 268 IMQMIPGWSTTGTYTTIIPLLI 289


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 373 PVLDRRGPNSAGPHPRGSTKLDKSRDAHNYCTFHHFGAS 489
           P L  R  +S+   P  ST   KSR A +  T H  G S
Sbjct: 133 PSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFS 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,496
Number of Sequences: 5004
Number of extensions: 58697
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)