Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L22
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical...   123   2e-28
AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical ...   100   1e-21
U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical pr...    85   5e-17
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical
           protein Y56A3A.19 protein.
          Length = 133

 Score =  123 bits (297), Expect = 2e-28
 Identities = 57/95 (60%), Positives = 74/95 (77%)
 Frame = +2

Query: 278 QSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMA 457
           Q  +YS   ++ L+ + +EER++ V   YDK+ A +LT+DS F  DLGLDSLDHVEV+MA
Sbjct: 41  QIRQYSA--KAPLTKKTLEERIVLVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMA 98

Query: 458 MEDEFGFEIPDGDAERLVRPKDIVQYIADKEDIYE 562
           ME+EFGFEIPDGDA+R   P+DI QYIADKED++E
Sbjct: 99  MEEEFGFEIPDGDADRFKTPRDIFQYIADKEDVFE 133


>AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical
           protein F16B4.6 protein.
          Length = 246

 Score =  100 bits (240), Expect = 1e-21
 Identities = 48/85 (56%), Positives = 65/85 (76%)
 Frame = +2

Query: 308 SKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 487
           +KL  +E+   V+    A   +S+++LT+DS F  DLGLD LDHVEV+MA+E+EFGFEIP
Sbjct: 165 AKLLQKEVFRFVIVTSSA---ISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEIP 221

Query: 488 DGDAERLVRPKDIVQYIADKEDIYE 562
           DGDA+R   P+DI+QYIADK D++E
Sbjct: 222 DGDADRFKTPRDILQYIADKVDVFE 246


>U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical
           protein F37C12.3 protein.
          Length = 145

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
 Frame = +2

Query: 311 KLSVQEIEERVLKVCKAYDKLSA---SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFE 481
           +L+ +++E+RVLK  +++D+  A   S L +D+    D G DSLD VE++MA+EDEFGFE
Sbjct: 59  QLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEFGFE 118

Query: 482 IPDGDAERLVRPKDIVQYIADKEDIYE 562
           IP  D+++    +D  +YI ++ED+YE
Sbjct: 119 IPLQDSDKFKTIRDAFKYICEREDVYE 145


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 188 FRPLRCSKSSAQLKPLSKYTKVRPFXNGVPQSHRYSTGVQSKLSVQEIEERVLKV 352
           + PL C +  +Q   L+K+TK + F N +      ST   +  S Q I  +VLK+
Sbjct: 591 YHPLSCQQKLSQFVLLTKFTKTKVFINHINSVSNLST--INHGSAQRIGLKVLKI 643


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 365 DKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRP-KDIVQYIA 541
           +KL + +L +       +  + LD VE++M++ED  G  + + D+  LVR  +D +  + 
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVRSVEDTIGVVL 211

Query: 542 DKEDIYE 562
           ++ D  E
Sbjct: 212 EELDSVE 218


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +2

Query: 380  SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIADK 547
            SQL  D++ ++DLGLDSL  VE+  A+E +    +   +   L   K  +Q +AD+
Sbjct: 2206 SQLNADAN-LSDLGLDSLMGVEIKQALERDHDIVLSMKEIRTLTLNK--LQQLADQ 2258


>U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical
           protein C56C10.7a protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 404 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 538
           F+  + LD   H  V  +A EDEFG      D  +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,348
Number of Sequences: 27780
Number of extensions: 268562
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)