Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_L17
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 102 6e-23
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 102 6e-23
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 4.9
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 4.9
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 6.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 6.5
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 8.5
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 102 bits (245), Expect = 6e-23
Identities = 47/91 (51%), Positives = 59/91 (64%)
Frame = +3
Query: 201 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 380
QNIRK++KDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 39 QNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRR 98
Query: 381 XXXXXXXXXXXXTAKKIDRHLYHSLYHEGXG 473
+ KID+HLYH+LY E G
Sbjct: 99 QRVLRRLLRKYRESGKIDKHLYHTLYLEAKG 129
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/37 (70%), Positives = 35/37 (94%)
Frame = +2
Query: 86 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 196
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 460 MKAXGNVFKNKRVLMEYIHRKKAXKAXTXMLSDXAEAPPHKVXEARXR 603
++A GN FK+KR L+E+I R KA T ++ + +A + AR R
Sbjct: 125 LEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQR 172
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 102 bits (245), Expect = 6e-23
Identities = 47/91 (51%), Positives = 59/91 (64%)
Frame = +3
Query: 201 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 380
QN+RK+IKDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 39 QNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRR 98
Query: 381 XXXXXXXXXXXXTAKKIDRHLYHSLYHEGXG 473
+ KID+HLYH+LY E G
Sbjct: 99 QRVLRRLLRKYRESGKIDKHLYHTLYLEAKG 129
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/37 (70%), Positives = 35/37 (94%)
Frame = +2
Query: 86 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 196
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 460 MKAXGNVFKNKRVLMEYIHRKKAXKAXTXMLSDXAEAPPHKVXEARXR 603
++A GN FK+KR L+E+I R KA T ++ + +A + AR R
Sbjct: 125 LEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQR 172
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 265 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 363
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 189 PTPXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 317
P +++R +KD + +PV+V S A ++T G G
Sbjct: 137 PEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 207 CSVLELVFAISLISFGSNHTFFLPHRITE 121
C + +V A LI TFFL H+I E
Sbjct: 305 CQAMNIVAAALLIHCTEEQTFFLMHKICE 333
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 101 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSXTEHP*DDQGWSRHQETCSSTLPR 268
L+ L VM ++ W D + N +TN+ EH W ++C STL R
Sbjct: 590 LKSSLNEKVMDLLAERYWTDDDISNWSKHTNALDEH------WKYKLDSCVSTLTR 639
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 68 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 181
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 178 LIDFIWIQPHLLFTTSHNRGCK 113
++D + PHLL +S N+ CK
Sbjct: 247 ILDKSFFSPHLLLQSSENQACK 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,303
Number of Sequences: 5004
Number of extensions: 53332
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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