Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L17
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   113   1e-25
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    29   6.1  
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  113 bits (273), Expect = 1e-25
 Identities = 51/91 (56%), Positives = 62/91 (68%)
 Frame = +3

Query: 201 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 380
           Q+IR+++ DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW   
Sbjct: 39  QSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRR 98

Query: 381 XXXXXXXXXXXXTAKKIDRHLYHSLYHEGXG 473
                        AKK+D+HLYH LY    G
Sbjct: 99  MRVLRNLLRRYRDAKKLDKHLYHELYLRAKG 129



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 24/37 (64%), Positives = 34/37 (91%)
 Frame = +2

Query: 86  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 196
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NS
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANS 37



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/52 (44%), Positives = 32/52 (61%)
 Frame = +1

Query: 460 MKAXGNVFKNKRVLMEYIHRKKAXKAXTXMLSDXAEAPPHKVXEARXRPQER 615
           ++A GN FKNK+ L+EYI +KK        L+D A+A   K  E+R R +ER
Sbjct: 125 LRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREER 176


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 429 SSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFC 277
           S + + T  +  LKP++   IV +++Y   L+LF+  +     F  +L FC
Sbjct: 93  SYFSYSTHSSTSLKPYIAHHIVMAISYCFCLFLFAMFAWKQHFFVEILSFC 143


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 241 LMTRPSL--IILRMFCXGVGVCDLIDFI 164
           ++TRPS+  + +  F  G+G+CDLI  I
Sbjct: 51  VLTRPSMRALTINNFLLGIGICDLIGMI 78


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 423 WQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSD-DPFYVLLCFCGHER 265
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 34  PLRFCFFLVVRWISP-CQDEFPQAAEE 111
           P+R+C+F  + W+ P  +D   QAA+E
Sbjct: 81  PVRWCYFNQLSWLDPFLKDNIGQAADE 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,687
Number of Sequences: 27780
Number of extensions: 321071
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)