Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L14
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   105   5e-25
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   105   5e-25

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  105 bits (252), Expect = 5e-25
 Identities = 73/187 (39%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
 Frame = +1

Query: 268 MSNLADPVAFAKDFLAGG----ISXRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGY 435
           MS LADPVAFAKDFLAGG    IS   +          Q    S    +  R +  +  +
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 436 RRRLRPHPQGSRVSFHSGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDXKTQFWRYF 615
            R   P  QG  +S+  G +                            GVD  TQF RYF
Sbjct: 61  VRI--PKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL--GGVDKNTQFLRYF 115

Query: 616 XXXXXXXXXXXXXXXCFVYPLDFARTRLAXDVGKGDGXREFSGLXNCIXXXFXSDGLIGL 795
                          CFVYPLDFARTRLA DVGK  G REF+GL NC+   F +DG+ GL
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175

Query: 796 YXXFGVS 816
           Y  FGVS
Sbjct: 176 YRGFGVS 182



 Score = 83.4 bits (197), Expect = 2e-18
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +3

Query: 465 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 581
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 80.6 bits (190), Expect = 2e-17
 Identities = 38/54 (70%), Positives = 45/54 (83%)
 Frame = +2

Query: 332 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGSPFILAW 493
           A+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPK  G  F+  W
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQG--FLSYW 73


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  105 bits (252), Expect = 5e-25
 Identities = 73/187 (39%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
 Frame = +1

Query: 268 MSNLADPVAFAKDFLAGG----ISXRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGY 435
           MS LADPVAFAKDFLAGG    IS   +          Q    S    +  R +  +  +
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 436 RRRLRPHPQGSRVSFHSGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDXKTQFWRYF 615
            R   P  QG  +S+  G +                            GVD  TQF RYF
Sbjct: 61  VRI--PKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL--GGVDKNTQFLRYF 115

Query: 616 XXXXXXXXXXXXXXXCFVYPLDFARTRLAXDVGKGDGXREFSGLXNCIXXXFXSDGLIGL 795
                          CFVYPLDFARTRLA DVGK  G REF+GL NC+   F +DG+ GL
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175

Query: 796 YXXFGVS 816
           Y  FGVS
Sbjct: 176 YRGFGVS 182



 Score = 83.4 bits (197), Expect = 2e-18
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +3

Query: 465 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 581
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 80.6 bits (190), Expect = 2e-17
 Identities = 38/54 (70%), Positives = 45/54 (83%)
 Frame = +2

Query: 332 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGSPFILAW 493
           A+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPK  G  F+  W
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQG--FLSYW 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,131
Number of Sequences: 438
Number of extensions: 3826
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)