Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L13
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    28   1.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.1  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   8.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   8.0  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 296 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 433
           +EN +D   E+S   +  AE    A E    TE++E   K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 308 TDEAPEDSPAENGDAEESND-ASENGDATEKKET 406
           T+E  E S   + D+E S+D +SE+GD+    ++
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDS 227


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 314 EAPEDSPAENGDAEESNDASENGDATEK 397
           E PEDS  E+G +E + D SE+G+  E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 296 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 433
           ++   DE  E+   EN D  +  D +EN +   + E G    S A+
Sbjct: 246 RDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,227
Number of Sequences: 5004
Number of extensions: 26783
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)