Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L12
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    94   1e-19
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    94   1e-19
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   3.5  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +2

Query: 77  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 229
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +2

Query: 77  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 229
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 679 TQRR*YGYPQNQXIPQEXTCXXKATKRPXTVKXP 780
           T RR Y YP  + +P       ++T+RP T + P
Sbjct: 225 TTRRPYPYPSFEVLPHHEEYEPRSTRRPTTTEEP 258


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 904 FXGGKRXGXFXGXVGFGHL*XGGXFX*XXXGGG-GXMEKRQQGG 776
           F GG R G F G   FG    GG F     GGG G ++    GG
Sbjct: 830 FGGGGRGGDFGGSGNFGGSGGGGSFGGSGGGGGFGGVKPSGFGG 873


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,351
Number of Sequences: 27780
Number of extensions: 304381
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)