Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_L08
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 93 3e-19
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 35 0.096
07_01_0442 - 3348638-3349126,3349978-3350322 34 0.17
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 33 0.39
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 30 2.1
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 4.7
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 29 4.7
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 6.3
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 6.3
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 28 8.3
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 28 8.3
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 92.7 bits (220), Expect = 3e-19
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +2
Query: 509 VATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKXLFRNCAYYWLFALYVAYHVNHPLYT 688
V T A W HY KR+ ET F+HRFSH T P+ +FRNCAYYW F Y+AY+ NHPLYT
Sbjct: 153 VQTYAMYYWCFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYT 212
Score = 45.2 bits (102), Expect = 7e-05
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Frame = +1
Query: 193 GKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAK-GKTLKDEDTLNSLNIQD---- 357
G + G++ + ++++ I KK YP RQ L L + GK+ K ++ +
Sbjct: 39 GGLRSRGKAKVADLQDAIYAKTKK-YYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97
Query: 358 --GS-KLFLKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY 480
GS + KDLGPQV + +F EY GPL +Y Y P Y
Sbjct: 98 GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKY 141
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 34.7 bits (76), Expect = 0.096
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 196 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 375
+I + E+S+ VK I+ + +++YP Q + + +GK LKD+ TL + + S L +
Sbjct: 14 EIEASPEASVAEVKRIIESTQGQNVYPADQQMLIH-QGKILKDDTTLEGNKVAENSFLVI 72
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 512 ATVAAICWSAHYAKRLFETLFIHRFSHGTMPL 607
A V + + H+ KR+ E LFIH++S G+MPL
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQYS-GSMPL 128
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 196 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 375
+I V + +VK I+ + + +YP Q + + +GK LKD+ TL+ + + S L +
Sbjct: 14 QIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIH-QGKVLKDDTTLDENKVLENSFLVI 72
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 274 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFV 444
P+RQ K+ KG LKD+ ++L ++DG KL + + + A GP+FV
Sbjct: 39 PERQ--KIMVKGGILKDDADWSTLGVKDGQKLMMIGTADE-----IVKAPEKGPVFV 88
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 487 VYHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWIRL 353
V HIK TV P+ QRV H + K +E + KAW+ L
Sbjct: 264 VAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIE-DNAEIKAWLAL 307
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 533 WSAHYAKRLFETLFI--HRFSHGTMPLKXLFRNCAYYWLFALYV--AYHVNHPLY 685
WS++++ + +F+ HR + G +PL+ +F C YW + + +Y +N+ L+
Sbjct: 139 WSSNFSLKNSSEMFLWYHRDAVG-VPLELVFIRCGKYWTVQILLPRSYFLNNKLH 192
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 479 MVHKPSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 592
+V + +SPE + + +CW+ H A R +T+ + F SH
Sbjct: 315 LVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 353
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 479 MVHKPSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 592
+V + +SPE + + +CW+ H A R +T+ + F SH
Sbjct: 319 LVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 357
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +1
Query: 151 MEIEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 330
+EI+I ++ S + V + +KEKI + + ++Q +L +G+ LKD++
Sbjct: 103 IEIKIKTLDSQTY--NLRVNKRVPVPLLKEKI--ATVTGILSEQQ--RLICRGRVLKDDE 156
Query: 331 TLNSLNIQDGSKLFL 375
L++ +++DG L L
Sbjct: 157 LLSAYHVEDGHTLHL 171
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 259 KKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 375
K+ + PD+Q +L GK LKD TL NIQ S L L
Sbjct: 424 KEGIPPDQQ--RLIFAGKQLKDGRTLADYNIQKESTLHL 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,375
Number of Sequences: 37544
Number of extensions: 391371
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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