Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L03
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...   100   3e-22
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    91   1e-19
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   3.4  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   3.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score =  100 bits (239), Expect = 3e-22
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = +2

Query: 443 PDKDVDGLXTINEGRVAVGDLSGF-IPXTPAGCVELIKKTGVXIAGXNVVXLXRSXIVGT 619
           P KDVDG    N G +A  D +    P TP G +EL+K   + +AG N V L RS IVG 
Sbjct: 147 PPKDVDGFGAFNIGLLAKNDATPIHYPCTPKGIMELLKDNKISVAGLNAVVLGRSDIVGN 206

Query: 620 PVSELLKWEPATVXVCXSXTXXLSEXTXTAXXLVVAIGRPXMVRGSWIXPXXVXIXCXIX 799
           P+S LL+ + ATV VC S T  L +    A  ++ A+G+P  VRG W+ P  V +   I 
Sbjct: 207 PISYLLRKDNATVTVCHSKTKDLIQHISNADLVIAALGKPEFVRGEWLKPGSVVVDVGIN 266

Query: 800 AI 805
           A+
Sbjct: 267 AV 268



 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = +1

Query: 169 SKWSGFEPRLAIVQVGGREXSNVYIRMKLKAAEKIGIAAEHIRLPRDXTEIELLAKITSL 348
           +K   F+P LAIVQVG RE SNVY+RMK KAA  +GI  ++   P       LL ++  L
Sbjct: 58  AKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLVGIDFKYCPFPETIQMPALLHELKKL 117

Query: 349 NESPSVHGIIVQMPL 393
           N+  +VHG++VQ+PL
Sbjct: 118 NDDHTVHGVLVQLPL 132


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/70 (58%), Positives = 50/70 (71%)
 Frame = +1

Query: 184 FEPRLAIVQVGGREXSNVYIRMKLKAAEKIGIAAEHIRLPRDXTEIELLAKITSLNESPS 363
           F   L I+QVGGRE SNVY+RMK +AA + GI+ EH+  P D TE +LL  I   NE P+
Sbjct: 32  FNVSLKIIQVGGREDSNVYVRMKTRAANEAGISCEHVNFPEDITEYDLLLAIKGFNEDPT 91

Query: 364 VHGIIVQMPL 393
           VHGIIVQ+PL
Sbjct: 92  VHGIIVQLPL 101



 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +2

Query: 443 PDKDVDGLXTINEGRVAVGDLSG-FIPXTPAGCVELIKKTGVXIAGXNVVXLXRSXIVGT 619
           P+KDVDG    N G++   +    F   TP G + ++K  G+ + G + V + RS IVG 
Sbjct: 116 PEKDVDGFCETNLGKLTKREGQPLFTACTPKGIMCILKHYGINVQGKHAVVIGRSNIVGR 175

Query: 620 PVSELLKWEPATVXVCXSXTXXLSEXTXTAXXLVVAIGRPXMVRGSWIXPXXVXIXCXIX 799
           P+S LL+   ATV +C S T  +++   TA  +V AIG P  V+  W+    V I   I 
Sbjct: 176 PMSILLEKANATVTLCHSKTESIADIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGIN 235

Query: 800 AI 805
           +I
Sbjct: 236 SI 237


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -2

Query: 615 PTMXLRXSXTTFX-PAIXTPVFLMSSTHPAGVQGINPDRSPTATRPSLIVXKPSTSLSGR 439
           P      + +TF  P++ +P F  SST        NP  +P +  P     KPST+    
Sbjct: 366 PLQNTNPAPSTFPNPSVASPAFPNSSTS-------NPSTAPASASPLASTLKPSTANDTN 418

Query: 438 DSIXDSMSVDR 406
            S   S S  R
Sbjct: 419 GSSSSSSSNPR 429


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 393 KGHLNNDAVNRRRFIQTRYF 334
           KG+LNN A N+  F + R+F
Sbjct: 365 KGYLNNPAANKSSFTKDRFF 384


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 288 FGGDTNFLSXLQLHPDVDVRXLAPAHLHDGKPGLEAR 178
           F   T+F S ++ +PD+ V  L    L +  PG++ +
Sbjct: 759 FNHYTHFTSPIRRYPDIIVHRLLERSLKNTSPGIDKK 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,018
Number of Sequences: 5004
Number of extensions: 34919
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)