Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_L03
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 92 6e-19
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 85 5e-17
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 75 1e-13
04_01_0039 + 455760-457631 29 4.7
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 28 8.3
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 91.9 bits (218), Expect = 6e-19
Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +2
Query: 446 DKDVDGLXTINEGRVAV-GDLSGFIPXTPAGCVELIKKTGVXIAGXNVVXLXRSXIVGTP 622
+KDVDG +N GR+A+ G F+P TP GC+EL+ + GV I G V + RS IVG P
Sbjct: 194 EKDVDGFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMP 253
Query: 623 VSELLKWEPATVXVCXSXTXXLSEXTXTAXXLVVAIGRPXMVRGSWIXPXXVXIXCXIXA 802
+ LL+ ATV + S T E T A ++ A+G +VRGSWI P I I
Sbjct: 254 AALLLQKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINP 313
Query: 803 I 805
+
Sbjct: 314 V 314
Score = 78.2 bits (184), Expect = 8e-15
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = +1
Query: 181 GFEPRLAIVQVGGREXSNVYIRMKLKAAEKIGIAAEHIRLPRDXTEIELLAKITSLNESP 360
G P LA++ VG R+ S Y+R K KA E +GI + + LP D +E E+L I + N P
Sbjct: 108 GVVPGLAVILVGSRKDSQTYVRNKKKACEAVGIKSYEVNLPEDSSEDEVLKHIATFNSDP 167
Query: 361 SVHGIIVQMPLDSDHAIDAHRVXDAVS 441
SVHGI+VQ+PL H ++ + +AVS
Sbjct: 168 SVHGILVQLPL--PHHMNDENILNAVS 192
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 85.4 bits (202), Expect = 5e-17
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Frame = +2
Query: 446 DKDVDGLXTINEGRVAV-GDLSGFIPXTPAGCVELIKKTGVXIAGXNVVXLXRSXIVGTP 622
+KDVDG +N G++A+ G F+P TP GC+EL+ ++GV I G V + RS IVG P
Sbjct: 116 EKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLP 175
Query: 623 VSELLKWEPATVXVCXSXTXXLSEXTXTAXXLVVAIGRPXMVRGSWIXPXXVXI 784
VS LL ATV + S T A ++ A G+ M++G WI P I
Sbjct: 176 VSLLLLKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVI 229
Score = 68.5 bits (160), Expect = 6e-12
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +1
Query: 190 PRLAIVQVGGREXSNVYIRMKLKAAEKIGIAAEHIRLPRDXTEIELLAKITSLNESPSVH 369
P LA+V VG R+ S Y++MK KA ++GI + + L D +E L+A++ LN P+VH
Sbjct: 33 PGLAVVIVGSRKDSQTYVQMKRKACAEVGIRSVDVDLAEDISEAALVAEVHRLNADPAVH 92
Query: 370 GIIVQMPL 393
GI+VQ+PL
Sbjct: 93 GILVQLPL 100
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 74.5 bits (175), Expect = 1e-13
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +2
Query: 446 DKDVDGLXTINEGRVAVGDLSG-FIPXTPAGCVELIKKTGVXIAGXNVVXLXRSXIVGTP 622
+KDVDG +N G +A+ F+P C+EL+ ++G+ + G +V + RS +VG P
Sbjct: 212 EKDVDGFHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLP 271
Query: 623 VSELLKWEPATVXVCXSXTXXLSEXTXTAXXLVVAIGRPXMVRGSWIXPXXVXI 784
S LL+ ATV + + T E T + ++ A G +VRGSW+ V I
Sbjct: 272 TSLLLQRHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVI 325
Score = 71.7 bits (168), Expect = 7e-13
Identities = 36/87 (41%), Positives = 52/87 (59%)
Frame = +1
Query: 181 GFEPRLAIVQVGGREXSNVYIRMKLKAAEKIGIAAEHIRLPRDXTEIELLAKITSLNESP 360
G P LA+V VG R S Y+R K+K E++GI + LP + TE ++ ++ NE P
Sbjct: 126 GHVPGLAVVLVGDRRDSESYVRYKIKGCEEVGIKSLLAELPGNCTEDVVVDSVSRFNEDP 185
Query: 361 SVHGIIVQMPLDSDHAIDAHRVXDAVS 441
SVHGI+VQ+PL +D R+ A+S
Sbjct: 186 SVHGILVQLPLPQH--MDEERILSAIS 210
>04_01_0039 + 455760-457631
Length = 623
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 337 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVXDAVS 441
++ LNE P+++G +V + DSD ++ + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 286 EHIRLPRDXTEIELLAKITSLNESPSVHGIIV-QMPLDSDHA 408
+HIR+PRD + TS++ + +VH V Q+P ++ A
Sbjct: 192 DHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERA 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,373
Number of Sequences: 37544
Number of extensions: 248525
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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