Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L02
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 61/79 (77%), Positives = 71/79 (89%)
 Frame = +1

Query: 85  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 264
           KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5   KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64

Query: 265 SKINKKEIVEAVTXIETPP 321
           SK++K+EI+EAVT IETPP
Sbjct: 65  SKMHKREILEAVTIIETPP 83



 Score =  112 bits (269), Expect = 7e-26
 Identities = 60/158 (37%), Positives = 81/158 (51%)
 Frame = +2

Query: 323 MVCVGVVGYXETPHGLRALLTVWAXXMSEDCRRRFYKNWYXCKKXAFXKASXXWXDXLGR 502
           MV VGVVGY ETP GLR+L TVWA  +SE+ +RRFYKNW+  KK AF K +  + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 503 XSLXXXFQKMXRYCSVVXVIAHTQMKLLQQRPKXAHIMEXHP*RWYXRGXVXWAXEXLEX 682
            S+    +++ +YCSVV V+AHTQ++      K AH+ME           V WA E  E 
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 683 PIPXRFCVCPXXXDXLPWCPXGXGYXGVPSXWXPXXLP 796
            +  +          +     G G  G  + W    LP
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 61/79 (77%), Positives = 71/79 (89%)
 Frame = +1

Query: 85  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 264
           KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5   KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64

Query: 265 SKINKKEIVEAVTXIETPP 321
           SK++K+EI+EAVT IETPP
Sbjct: 65  SKMHKREILEAVTVIETPP 83



 Score =  112 bits (269), Expect = 7e-26
 Identities = 60/158 (37%), Positives = 81/158 (51%)
 Frame = +2

Query: 323 MVCVGVVGYXETPHGLRALLTVWAXXMSEDCRRRFYKNWYXCKKXAFXKASXXWXDXLGR 502
           MV VGVVGY ETP GLR+L TVWA  +SE+ +RRFYKNW+  KK AF K +  + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 503 XSLXXXFQKMXRYCSVVXVIAHTQMKLLQQRPKXAHIMEXHP*RWYXRGXVXWAXEXLEX 682
            S+    +++ +YCSVV V+AHTQ++      K AH+ME           V WA E  E 
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 683 PIPXRFCVCPXXXDXLPWCPXGXGYXGVPSXWXPXXLP 796
            +  +          +     G G  G  + W    LP
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 249 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 85
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,162
Number of Sequences: 5004
Number of extensions: 40695
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)