Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_L02
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   137   1e-32
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   136   3e-32

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  137 bits (331), Expect = 1e-32
 Identities = 59/79 (74%), Positives = 69/79 (87%)
 Frame = +1

Query: 85  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 264
           KF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPG 64

Query: 265 SKINKKEIVEAVTXIETPP 321
           SK++KKE  EAVT IETPP
Sbjct: 65  SKLHKKETCEAVTIIETPP 83



 Score =  106 bits (255), Expect = 2e-23
 Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
 Frame = +2

Query: 323 MVCVGVVGYXETPHGLRALLTVWAXXMSEDCRRRFYKNWYXCKKXAFXKASXXWXDXLGR 502
           +V VG+V Y +TP GLR+L +VWA  +SE+ RRRFYKNW   KK AF K +  +    G+
Sbjct: 84  LVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143

Query: 503 XSLXXXFQKMXRYCSVVXVIAHTQM-KLLQQRPKXAHIMEXHP*RWYXRGXVXWAXEXLE 679
             +    +KM +Y S+V VIAHTQ+ K+   + K AH+ME           V +  +  E
Sbjct: 144 KEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFE 203

Query: 680 XPIPXRFCVCPXXXDXLPWCPXGXGYXGVPSXWXPXXLP 796
             IP            +     G GY GV + W    LP
Sbjct: 204 KEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  136 bits (328), Expect = 3e-32
 Identities = 58/79 (73%), Positives = 69/79 (87%)
 Frame = +1

Query: 85  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 264
           KF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPG 64

Query: 265 SKINKKEIVEAVTXIETPP 321
           SK++KKE  EAVT IETPP
Sbjct: 65  SKLHKKETCEAVTIIETPP 83



 Score =  105 bits (251), Expect = 6e-23
 Identities = 59/159 (37%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
 Frame = +2

Query: 323 MVCVGVVGYXETPHGLRALLTVWAXXMSEDCRRRFYKNWYXCKKXAFXKASXXWXDXLGR 502
           +V VG+V Y +TP GLR+L +VWA  +SE+ RRRFYKNW   KK AF K +  +    G+
Sbjct: 84  IVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143

Query: 503 XSLXXXFQKMXRYCSVVXVIAHTQM-KLLQQRPKXAHIMEXHP*RWYXRGXVXWAXEXLE 679
             +    +KM +Y SVV VI HTQ+ K+   + K AH+ME           V +  +  E
Sbjct: 144 KEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFE 203

Query: 680 XPIPXRFCVCPXXXDXLPWCPXGXGYXGVPSXWXPXXLP 796
             IP            +     G GY GV + W    LP
Sbjct: 204 KEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,131
Number of Sequences: 37544
Number of extensions: 302539
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)