Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_K23
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   108   6e-24
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   108   6e-24
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    29   4.7  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  108 bits (259), Expect = 6e-24
 Identities = 52/96 (54%), Positives = 65/96 (67%)
 Frame = +2

Query: 116 GRTAKNVNATKYTRYHSTKSPRXRHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 295
           G+  K+ N  K T+Y   K  +    AQGRRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQYKKGKESKF---AQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 296 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 403
           R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70  RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  108 bits (259), Expect = 6e-24
 Identities = 52/96 (54%), Positives = 65/96 (67%)
 Frame = +2

Query: 116 GRTAKNVNATKYTRYHSTKSPRXRHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 295
           G+  K+ N  K T+Y   K  +    AQGRRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQYKKGKESKF---AQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 296 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 403
           R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70  RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 104 QNSAGRTAKNVNATKYTRYHSTKSPRXRHAAQGRRRYDRKQQ 229
           + SAG TAK+ N TK  +   TKS R  H A+  R++ + ++
Sbjct: 66  RQSAGSTAKSKNKTKSEKSKKTKS-RGVHVAKKWRKFKKTKK 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,397,611
Number of Sequences: 27780
Number of extensions: 182357
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)