Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_K14
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 5e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.003
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 37 0.003
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.023
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.16
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.29
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 4.7
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 4.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 4.7
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 725 PPPX---RXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPPXPXPPP 874
PPP P P P P P P P PP PP PPP P PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPPPPP 783
Score = 34.3 bits (75), Expect = 0.023
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +2
Query: 725 PPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPPXPXPPP 874
PPP P P P P +P P PP PP PP P PPP
Sbjct: 734 PPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPP-PPPPP 781
Score = 32.3 bits (70), Expect = 0.094
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = +2
Query: 755 PYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPPXP-----XPPP 874
P P I +P P PP P PP PPP P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 38.7 bits (86), Expect = 0.001
Identities = 25/85 (29%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Frame = +2
Query: 626 SXPAAXLTSAGXAPQXPXXPXTCXXRPXTPXXX-PPPXRXPCPXPYPXXPXIXXXNSPTP 802
S P +S+G P P P P PP P P P + P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 803 XAPXPPXP-PXRXPPXPPPXPXPPP 874
PP P P PP P P PP
Sbjct: 1108 SVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 34.7 bits (76), Expect = 0.018
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Frame = +2
Query: 614 VXTXSXPAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNS 793
V S A + + AP P P P PP P P P
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-APSSGIPPVPKPAAGVPPVPPPSEAPPV 1200
Query: 794 PTPXAPXPP-XPPXRXPPXPPPXPXPPP 874
P P PP PP PP P P PP
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 34.3 bits (75), Expect = 0.023
Identities = 27/92 (29%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Frame = +2
Query: 614 VXTXSXPAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNS 793
V S A + AP P P P PP + P P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP-APSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 794 PTPXAPXPPXPPX-RXPPXPPPX----PXPPP 874
P P A PP PP PP P P P PPP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 33.5 bits (73), Expect = 0.041
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 713 PXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPPXPXPPP 874
P PP P P P P + P AP P P PP P P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVP----PPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 32.7 bits (71), Expect = 0.071
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 662 APQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXP 841
AP P P P P P P P+ AP P P P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Query: 842 PXPPPXPXPPP 874
P P P PP
Sbjct: 1180 PVPKPAAGVPP 1190
Score = 32.3 bits (70), Expect = 0.094
Identities = 25/86 (29%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Frame = +2
Query: 626 SXPAAXLTSAGXAPQX-PXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTP 802
S PA AP P P P P P P P P P P
Sbjct: 1075 SIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Query: 803 ---XAPXPPXPPXRXPPXPPPXPXPP 871
AP P P PP P P PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 30.3 bits (65), Expect = 0.38
Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Frame = +2
Query: 632 PAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXP----CPXPYPXXPXIXXXNSPT 799
P L SA AP P P T P P P P P P P + P
Sbjct: 1022 PPVPLPSAD-APPIPV-PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPA-PSSEIPSIPA 1078
Query: 800 PXAPXPPXPPXRXPPXPPPXPXPPP 874
P P P PP P P PP
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPP 1103
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Frame = +2
Query: 713 PXXXPPPXRXPCPXPYPXXPXIXXXNS----PTPXAPXPPXP-PXRXPPXPPPXPXPPP 874
P P P P P P + + P P PP P P PP P P PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 29.1 bits (62), Expect = 0.88
Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Frame = +2
Query: 632 PAAXLTSAGXAPQXPXXPXTCXXRPX-TPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPX- 805
P+A + + P P P P PP + P P + P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 806 APXPPXPPXRXPPXPPPXPXPPP 874
AP P P PP P P PP
Sbjct: 1120 APPVPKPSVAAPPVPVP-SGAPP 1141
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 662 APQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXP 841
AP P P P P P P P+ AP P P P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG-AP 1159
Query: 842 PXPPPXPXPPP 874
P P P PP
Sbjct: 1160 PVPKPSVAAPP 1170
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = +2
Query: 755 PYPXXPXIXXXNSPTPXAPXPPX--PPXRXPPXPPPXPXP 868
P P + +S P P P PP P PP P P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP 1046
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Frame = +2
Query: 701 RPXTPXXXPPPX------RXPCPXP---YPXXPXIXXXNSPTPXAPXPPXPPX-----RX 838
RP P PPP P P +P + S +P AP PP +
Sbjct: 962 RPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKA 1021
Query: 839 PPXPPPXPXPPP 874
PP P P PP
Sbjct: 1022 PPVPLPSADAPP 1033
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Frame = +2
Query: 710 TPXXXPP---PXRXPCPXPYPXXPXIXXXNSP-----TPXAPXPPXPPXRXPPXPPPXPX 865
+P PP P P P P P + AP P P PP P P
Sbjct: 981 SPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTA 1040
Query: 866 PP 871
PP
Sbjct: 1041 PP 1042
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Frame = +2
Query: 638 AXLTSAGXAPQXPXXPXTCXXRPXTPXXXPP--PXRXPCPXPYPXXPXIXXXNSPTPXAP 811
A TS P P P + P P PP P P P P I P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAP--PSLPPSAPPSLPMGAPAAPPLPPSAPIAPP-LPAGMPA 465
Query: 812 XPPXPPXRXPPXPPPXPXPPP 874
PP PP P PPP P P P
Sbjct: 466 APPLPPAA--PAPPPAPAPAP 484
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/81 (25%), Positives = 22/81 (27%)
Frame = +2
Query: 632 PAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAP 811
P S G P P P P P P P PTP +
Sbjct: 365 PPRSAPSTGRQPP-PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 812 XPPXPPXRXPPXPPPXPXPPP 874
P PP P PP P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAP 444
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Frame = +2
Query: 689 TCXXRPXTPXXXP---PPXRXP---CPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPP-- 844
T P P P PP R P P P P P S P +P P P P
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAI 284
Query: 845 -XPPPXPXPPP 874
P PPP
Sbjct: 285 NSTSKPPLPPP 295
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Frame = +2
Query: 647 TSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXP 826
TS P P P + P P P P P + P P AP P
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPP--PIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 827 PXR---XPPXPPP 856
PP PPP
Sbjct: 283 AINSTSKPPLPPP 295
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +2
Query: 632 PAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPP-PXRXPCPXPYPXXPXIXXXNSPTPXA 808
P + L AP P P P +P PP P + P P P P +P
Sbjct: 133 PQSELRPPTSAPPRPSIP------PPSPASAPPIPSKAP-PIPSSLPPPAQPA-APVKSP 184
Query: 809 PXPPXPPXRXPPXPPPXPXPP 871
P P P PP PP P PP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
Score = 31.1 bits (67), Expect = 0.22
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Frame = +2
Query: 647 TSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXA---PXP 817
+SA AP P T P PP P P P P I P P + P
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSP-ASAPPIPSKAPPIPSSLPPPAQ 176
Query: 818 PXPPXRXPPX--------PPPXPXPPP 874
P P + PP PP P PP
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPPKVPP 203
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +2
Query: 656 GXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXR 835
G AP P + P P P P P P + P AP PP P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
Query: 836 XPPXPPP 856
P P P
Sbjct: 1740 APSVPNP 1746
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 794 PTPXAPXPPXPPXRXPPXP--PPXPXPPP 874
P AP PP PP PP P PP P PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 32.3 bits (70), Expect = 0.094
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 713 PXXXPPPXRXPCPXPYPXXPXIXXXNSPTPX-APXPPXPPXRXPPXPPPXPXP 868
P PP P P + N+P P AP PP P + PP P P P
Sbjct: 1444 PQVVPPAPMHAVAPVQPKAPGMVT-NAPAPSSAPAPPAPVSQLPPAVPNVPVP 1495
Score = 29.9 bits (64), Expect = 0.50
Identities = 24/82 (29%), Positives = 28/82 (34%)
Frame = +2
Query: 626 SXPAAXLTSAGXAPQXPXXPXTCXXRPXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPX 805
S AA L + P P + P P PP + P P P + P P
Sbjct: 1667 SKDAAALAAKLFGGMAPAHPVSTP--PVRPQSAAPP-QMSAPTPPPPPMSV----PPPPS 1719
Query: 806 APXPPXPPXRXPPXPPPXPXPP 871
AP P P PP P P P
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAP 1741
Score = 29.1 bits (62), Expect = 0.88
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +2
Query: 731 PXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXP-PXPPPXPXPPP 874
P P P P +P P P PP P P PP PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.3 bits (75), Expect = 0.023
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 794 PTPXAPXPPXPPXRXPPXPPPXPXPP 871
P P PP PP PP PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 788 NSPTPXAPXPPXPPXRXPPXPPP 856
N P P P PP + PP PPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 755 PYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXP-PPXPXPPP 874
P P P + N P P P P PP P P P P PP
Sbjct: 102 PLPREPPLP--NEPVPEEPLPGEPPLPDEPVPEEPLPGEPP 140
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.29
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 870 GGXGXG-GGXGGXRXGGXGGXGAXGVGEXXXXXLGXXGXGXGQGXRXGG 727
GG G GG GG R GG GG G G G G G+G GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGG-ARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/67 (32%), Positives = 25/67 (37%)
Frame = -3
Query: 861 GXGGGXGGXRXGGXGGXGAXGVGEXXXXXLGXXGXGXGQGXRXGGGXXXGVXGRXXQVXG 682
G GG GG R GG GG G G G G+G GGG GR +
Sbjct: 6 GSRGGRGGSR-GGRGGFNG-----------GRGGFGGGRGGARGGGRGGARGGRGGRGGA 53
Query: 681 XXGXXGA 661
G G+
Sbjct: 54 RGGRGGS 60
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/57 (26%), Positives = 18/57 (31%)
Frame = +2
Query: 704 PXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPPXPXPPP 874
P P PP + +P P P P + P P P P PPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIP-PTYTPKQADPLPAPPPPPPP 244
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 794 PTPXAPXPPXPPXRXPPXPPPXP 862
P+ AP P PP PPP P
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPP 196
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 784 PXLTXPXRXXPXPPPPPXP 840
P + P P PPPPP P
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +2
Query: 704 PXTPXXXPPPXRXPCPXPYPXXPXIXXXNSPTPXAPXPPXPPXRXPPXPPP 856
P P P P P P S + P P P PP PPP
Sbjct: 1000 PIKPNKPTKPDHLVAPRVKPLLPP--RSGSSSSGVPAPNLTPVNVPPTPPP 1048
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 131 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 226
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 205 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 384
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 385 VKAKN 399
K N
Sbjct: 163 SKKLN 167
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 169 YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 324
+ Y F +E +T S + NL E+++L NM+ EL KFP + GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 791 SPTPXAPXPPXPPXRXPPXPPPXPXPPP 874
+P P P P P + P P P PP
Sbjct: 153 TPVPKKPSKPSKPRKKVPVSHPLPPTPP 180
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 784 PXLTXPXRXXPXPPPPPXPXXXPPXXXPP 870
P P R PPPP PP PP
Sbjct: 36 PQWECPVRGLTIPPPPSVDHSAPPSGPPP 64
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Frame = +2
Query: 713 PXXXPPPXRXPC---PXPY-PXXPXIXXXNSPT-PXAPXPPXPPXRXPPXPPP 856
P PP P P + P P +P P P P P PP PPP
Sbjct: 135 PNMFGPPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,893
Number of Sequences: 5004
Number of extensions: 56082
Number of successful extensions: 527
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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