Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_K07
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   8.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 824 GXYGXXRPXXSPKGRXGGTGIPVXRXGXGXREGARGXFPGGKR 696
           G  G  R       R G  G      G G R G+RG F GG R
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 703 PPGXXPRAPSLXPXPXRFTGIPVPP 777
           PP   P APS  P   +  G P+PP
Sbjct: 583 PPYVRPSAPSKLPDTRQSIGDPLPP 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,571
Number of Sequences: 5004
Number of extensions: 26315
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)