Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_K05
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   6.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   8.4  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +3

Query: 159 TNPHRLRRTSKSREIIQGNNYIVQYSWFCMGLYSSAILAVSVYS 290
           T+P+ L + ++   +++ N Y+VQ     + LY++++ +   Y+
Sbjct: 261 THPNVLDKWNEFISLLKSNGYLVQEIQLPISLYANSVYSTMAYA 304


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
 Frame = -2

Query: 363 VQRIASVHWPWRNSKNGSKQKSSTKNIH*LRELLNYITPYKT----NYTEQCNYCPV*F- 199
           +QR+ASV  P R++ + SK+K  TK+   ++ L    +  ++    N T +  +C + F 
Sbjct: 645 LQRVASVTSPSRHNSD-SKEKKQTKSPSLVKTLKEMHSSDQSCADCNTTARVEWCAINFP 703

Query: 198 LCFCLSDVIYVGWYRCKEIHLATIRLISL 112
           +  C+      G +R    H+  IR ++L
Sbjct: 704 VVLCID---CSGIHRSLGTHITKIRSLTL 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,166
Number of Sequences: 5004
Number of extensions: 44277
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)