Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_K05
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         46   4e-05
05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053...    30   2.2  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 169 IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYR 348
           +D+ GQ  AE L + ++   ++  FV GY +  F   +             TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 349 RNPLNW 366
           R+PL W
Sbjct: 61  RHPLKW 66


>05_04_0328 -
           20303330-20303440,20304123-20304942,20305170-20305368,
           20305417-20305954
          Length = 555

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = -3

Query: 185 CPT*SMWVGIDVKKSILLQLD*YHLPQ---QQIILKKLIRSNQLNGLTIKRQILR 30
           CP   + +G D+KK  LLQ + ++  Q   +Q+I  ++  S ++  L IK QIL+
Sbjct: 473 CPIRHLLLG-DIKKEQLLQCETFNTTQTNTEQVIKLQVSNSKEIQELQIKLQILK 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,821
Number of Sequences: 37544
Number of extensions: 301647
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)