Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_K03
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    30   1.9  
Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           29   3.3  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    29   3.3  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    29   3.3  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    29   3.3  
AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.     29   3.3  
Z68751-7|CAA92977.2|  319|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
 Frame = +2

Query: 209 LDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFT--TIEGVNNGFAQTVDPT 382
           +D PY +T+DY    +  S     + +      +    ++ +  T   +N   +      
Sbjct: 540 IDLPYYVTIDYPAKLMARSLIYRKNLEEKLAVNFKTVNRQLSDQTDRLLNANCSNCQFND 599

Query: 383 TQTVYIGGSDGLYRYDKDTKRAELLGASSINIWTIFYKDVLY 508
            Q     GSD  Y ++KDT +A     S + +    Y + +Y
Sbjct: 600 IQKALTNGSDKFYLFEKDTYKALTYDGSHLTLTGFKYIEPIY 641


>Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical
           protein K10D3.2 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 461 ASSINIWTIFYKDVLYFSTYPSHILYTFSNGQITRFPDLEDXRV 592
           AS+ ++W +   D       P+ ++  F +G  TRF D+ D  +
Sbjct: 100 ASAPDVWNVKRSDSARSPNRPNSLIANFVSGDATRFVDVNDNEI 143


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
           +L   L+ P  L +DY  +D+YF      D +     R N+DTK+   +  ++NG     
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606

Query: 374 D 376
           D
Sbjct: 607 D 607


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
           +L   L+ P  L +DY  +D+YF      D +     R N+DTK+   +  ++NG     
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606

Query: 374 D 376
           D
Sbjct: 607 D 607


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
           +L   L+ P  L +DY  +D+YF      D +     R N+DTK+   +  ++NG     
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606

Query: 374 D 376
           D
Sbjct: 607 D 607


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
           +L   L+ P  L +DY  +D+YF      D +     R N+DTK+   +  ++NG     
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606

Query: 374 D 376
           D
Sbjct: 607 D 607


>AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 461 ASSINIWTIFYKDVLYFSTYPSHILYTFSNGQITRFPDLEDXRV 592
           AS+ ++W +   D       P+ ++  F +G  TRF D+ D  +
Sbjct: 100 ASAPDVWNVKRSDSARSPNRPNSLIANFVSGDATRFVDVNDNEI 143


>Z68751-7|CAA92977.2|  319|Caenorhabditis elegans Hypothetical
           protein T05E11.6 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 197 LYENLDRPYLLTVDYS-TNDLYFSYSIDNDEDSSATARYNLDTKKFTTIE 343
           +YE +D P +L++  S T++  +SY +D D       RY   T  F T E
Sbjct: 203 MYEWIDSPNVLSLSSSLTHEESYSYDVDTDIGVYVIDRYTHYTVNFLTKE 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,811,499
Number of Sequences: 27780
Number of extensions: 333562
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)