Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_J22
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 40 0.003
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 35 0.092
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 35 0.092
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 31 1.5
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 30 2.0
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 30 2.6
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 6.1
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 29 6.1
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 54 GGLACCAVCNQKTQXXCAXCLNIYYCNTEHQRQXWK-XXKSECIPKLTKQLAKSDNFGEC 230
G CAVC + T C C + YC+ + Q W+ K+EC P T A D+ E
Sbjct: 118 GAKGVCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNECRPPSTD--ANHDDVAEL 175
Query: 231 STVTKEAAKEIG----NIAQNYQHDVTKVCND 314
S + ++ NIA+ K ND
Sbjct: 176 SVAKERKIEQTSASEENIAETNTAATVKNLND 207
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 34.7 bits (76), Expect = 0.092
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 78 CNQKTQXXCAXCLNIYYCNTEHQRQXWKXXKSECIPKLTKQLAKSD 215
C + + C C + YC+ HQ W K EC +L +Q+++ D
Sbjct: 46 CAGEARRRCGGCGAVAYCSRAHQTVHWGFHKEEC-ARLAEQMSRID 90
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 34.7 bits (76), Expect = 0.092
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +3
Query: 57 GLACCAVCNQ-KTQXXCAXCLNIYYCNTEHQRQXWK-XXKSECIPKLTKQLAKSDNFGEC 230
G C C K C+ C YC+ +HQ W+ KS+C+ ++ A S F
Sbjct: 188 GAPVCHWCGTWKGDKLCSSCKKARYCSEKHQTLHWRSGHKSDCLQLISSSEASSSIFPAV 247
Query: 231 STVTKEAAKEIGNIAQNYQ 287
V + IA +Y+
Sbjct: 248 GKVPASKSWPEYEIAIDYE 266
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 102 CAXCLNIYYCNTEHQRQXWKXXKSEC--IPKLTKQLAK 209
C+ C +YC + QR+ WK + EC I LT+ K
Sbjct: 72 CSVCRVAWYCGSACQREEWKLHQLECRAIAALTEDRKK 109
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 102 CAXCLNIYYCNTEHQRQXWK-XXKSECIPKLTKQLAKSDNFGECSTVTKEAAKEI 263
C+ C + YC+ Q WK KS C+P +A + G AA ++
Sbjct: 322 CSVCSGVIYCSRACQAMHWKVAHKSACVPMAHWLVAANAGAGNAVGAAAAAAAQM 376
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 54 GGLACCAVCNQKTQXXCAXCLNIYYCNTEHQRQXWK-XXKSECIPKLTKQLAKS 212
GG CA C C+ C + YC+ Q + W+ K +C KQ+ KS
Sbjct: 100 GGGEPCAACGYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKC-----KQMKKS 148
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 69 CAVCNQKTQXXCAXCLNIYYCNTEHQRQXWK 161
CA C+ + C+ C ++ YC+ + Q W+
Sbjct: 32 CATCHGPAKTRCSRCKSVRYCSGKCQIIHWR 62
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 102 CAXCLNIYYCNTEHQRQXWK-XXKSECIPKLTKQLAKSDNFGECSTVTKEAAKEI-GNIA 275
C+ C YC+ +HQ W+ K+EC Q++ S N S + +A K GNI
Sbjct: 154 CSRCRKSSYCSKKHQELHWRAKHKNEC-----HQISGSHN---ASAIMPDAGKVFAGNIW 205
Query: 276 QNY 284
Y
Sbjct: 206 PEY 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,452
Number of Sequences: 37544
Number of extensions: 211635
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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