Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J21
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   238   6e-64
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   1.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   2.0  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   6.0  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   7.9  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   7.9  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  238 bits (583), Expect = 6e-64
 Identities = 123/220 (55%), Positives = 150/220 (68%), Gaps = 1/220 (0%)
 Frame = +1

Query: 82  MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 258
           MS+L+QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 259 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 438
             G SI  Q+    D L + FG +IL I+PGRVS EVDAR SFD   +I KA   I L+ 
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120

Query: 439 EHGITKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEXNVTLISPFV 618
             GI +ER+LIK+AST+EGIQAAK+LE++ GIHCNLTLLFS  QA+ACAE NVTLISPFV
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFV 179

Query: 619 GXILDWYVEHTXXTYXGXEXPXXXSXTKITTXXXXFGYXT 738
           G ILD+Y       Y   E P   S + I      FGY T
Sbjct: 180 GRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKT 219


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 449 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 270
           +P S NK+ +   F  +     +N    S+ ++   I N S P   +S + +SAT  S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207

Query: 269 LPL 261
           +P+
Sbjct: 208 IPI 210


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +2

Query: 416 LNLSIYLLNMVLQKKEF*LNWPPLGKEFKQPKSWRRSMESIV 541
           L+ SI  + +  ++ +F L+  P+ ++FK  +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 115 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 294
           T +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330

Query: 295 TLDMLS 312
            L++ S
Sbjct: 331 FLNLPS 336


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 330 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 241
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 458 SFVIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 306
           S +IP   +K    +A    +SL ++NLA+ +  T    IF+++ PK   S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,702
Number of Sequences: 5004
Number of extensions: 60379
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)