Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J19
         (1301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.017
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.28 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.017
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -1

Query: 767 PXXGGGXPPPXXGGXXGPPGXXXPPGXPXGXPPGGXXXGPPPPPP 633
           P  G   P P        P    PP    G PPGG    PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.83
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -1

Query: 728 GXXGP-PGXXXPPGXPXGXPPGGXXXGPPPPPPP 630
           G  GP P     P  P    P     GPPP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +2

Query: 1034 PPXXAPPPXPXXGPGXXPPXXXXGXPXPPPXXPPPXXXXXXP 1159
            P   AP P P   P   P     G P  P   PPP      P
Sbjct: 16   PSSGAPGPQP--SPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 728 PPXXXGGXPPXXXXXPPXAXPPPXPP 805
           P     G PP     PP   PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 1031 PPPXXAPPPXPXXGPGXXPPXXXXGXPXPPPXXPPP 1138
            P P  +P   P       PP    G P   P   PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 1117 PPXXXPPPXXXGXPXXXPPXPPP 1185
            P    PP    G P   PP  PP
Sbjct: 34   PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/47 (25%), Positives = 12/47 (25%)
 Frame = +1

Query: 997  PXPXXGXGAPXXPPXGGXPPXPXXGXGGXXPXXXPXGAGPPPXXXPP 1137
            P P          P  G PP P  G     P   P    P      P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 3  PPXPAGPXPPXXPXRAPGXPP 65
          PP P+   PP  P   PG PP
Sbjct: 39 PPNPSQGPPPGGP---PGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 1019 GPRXPPPXXAPPPXPXXGPG 1078
            G    PP  APPP P    G
Sbjct: 333  GDSDTPPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 773 PPXAXPPPXPPRXXG 817
           PP   PPP PP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect(2) = 0.28
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 650 PPPPPPPP 627
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 13  PPXPXPPXXPPA 48
           PP P PP  PP+
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 22.2 bits (45), Expect(2) = 0.28
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 647 PPPPPPPXXXP 615
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 650  PPPPPPPP 627
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 650  PPPPPPPP 627
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 653  GPPPPPPPP 627
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.158    0.578 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,166
Number of Sequences: 438
Number of extensions: 15639
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)