Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J16
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.67 
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   2.0  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   4.7  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   4.7  
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    28   8.3  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   8.3  
02_02_0242 + 8209317-8209467,8209905-8209957,8210152-8210163,821...    28   8.3  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 116 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 244
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 116 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 217
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 116 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 226
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 118 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 291
           +PP   PL+P +PSS+  H    LQ      +  L  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 292 LPNS 303
           +PN+
Sbjct: 239 MPNA 242


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -3

Query: 258 GRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATT 79
           G T  QRA       S++  V+LQ V  +Q   +W   +    V++  +FC Y   RA  
Sbjct: 87  GLTPAQRAESWDNYCSLFS-VVLQGVVNMQLPNQWLWDMVDEFVYQFQSFCQY---RAKL 142

Query: 78  KNTEKEETGLWNQ 40
           KN   EE  L  Q
Sbjct: 143 KNKTHEEIALLKQ 155


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 270 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 124
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


>02_02_0242 +
           8209317-8209467,8209905-8209957,8210152-8210163,
           8210863-8210949,8212293-8212442,8212600-8212791
          Length = 214

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 498 EEQQERHHKTEQTHSLRTRRNPEWRMRTTAA 406
           E+Q++R H+ E+    RT R PE R   T+A
Sbjct: 111 EQQEQRQHRPEKHCEERTARAPEHREWVTSA 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,170,219
Number of Sequences: 37544
Number of extensions: 355077
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)