Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J16
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.51 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.89 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 126 WRQTAFCFYKVRRATTKNTEKEETGLWNQXLR 31
           W Q  FC+++   AT KN  +    L    +R
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHKCFMR 564



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -3

Query: 525 FLKVNSLESEEQQERHHK 472
           F++ +SL  ++QQ++HH+
Sbjct: 91  FMQQHSLYLQQQQQQHHQ 108


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 489 QERHHKTEQTHSLRTRRNPEWRMRTT 412
           ++R H++  T  +  +  P+W  R+T
Sbjct: 596 EKREHRSSSTKGITIQEPPQWHTRST 621


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/37 (18%), Positives = 19/37 (51%)
 Frame = -3

Query: 516 VNSLESEEQQERHHKTEQTHSLRTRRNPEWRMRTTAA 406
           +N+ + ++QQ++  + +Q    + ++   W M    A
Sbjct: 435 INAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPA 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,571
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)