Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    59   9e-10
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   8.1  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 175 NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 354
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 355 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP 450
            + Y      G    +++LK  R++ S   GHP
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHP 107


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 437 WRATPPRDSTSWTSAPAPWARGLAVAA 517
           W A     S+S TS+PAPWA+  + AA
Sbjct: 409 WAAASTSVSSS-TSSPAPWAKPASSAA 434


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 455 RDSTSWTSAPAPWARGLAVAA-GMAYVGKYFDQA 553
           RD+ SW S    W++  A AA G+ + G Y++QA
Sbjct: 369 RDNLSWLSKANNWSKFTATAALGVIHRG-YYNQA 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,381
Number of Sequences: 5004
Number of extensions: 40982
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)