Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J14
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    75   1e-14
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    31   0.27 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    29   0.63 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   3.4  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   4.5  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
 Frame = +2

Query: 227 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 394
           L N+  +  S+   N M     E    D+++  +  E R A   RL YQSRKRG+LE DL
Sbjct: 7   LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66

Query: 395 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPXEF-DNEIMXLLXKH 571
           LLS FAK  ++ +       YD+L++ P  DWDI YW   ++  P ++  +++   L K+
Sbjct: 67  LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124

Query: 572 AXNEDKIALRQPDL 613
             ++    LR P+L
Sbjct: 125 CRSQRNHTLRMPEL 138


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 236 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 412
           +Q + F  +  NN+DTT ++  L D+ K+  +        H+ + + G ++  L+ + F 
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712

Query: 413 K 415
           K
Sbjct: 713 K 713


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 25/93 (26%), Positives = 37/93 (39%)
 Frame = +2

Query: 197 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 376
           TR   L+   LK+++ +    +    MD    ++ +   +    LEKRKA LH Q  K  
Sbjct: 7   TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63

Query: 377 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINS 475
                LL   +    L  +   Q   Y  L NS
Sbjct: 64  QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS 94


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 122 ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 277
           ET+ +K++ LSK+ K+++++IKM      NL +    N+ K   S  T +++
Sbjct: 33  ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 134 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 301
           L+ L + ++D N +  +K    M+H R L +S NA+  ++   F    T  MD      P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 200 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 373
           R+L  +YN    +     SS++T N +     ++P    E+++   KRK  +   +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 239 QKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 409
           +KV FSS+   N D+TY         K Q L K  A L  Q  K+   +L  DL  L   
Sbjct: 42  EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93

Query: 410 AKKYLNGFNE--KQTMMYDRLINSPSN 484
           +  Y  G ++  K    Y   +N   N
Sbjct: 94  SDCYAKGMDDIMKHVATYTATMNERMN 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,772
Number of Sequences: 5004
Number of extensions: 45454
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)