Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J11
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    33   0.071
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.1  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   8.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   8.1  

>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +2

Query: 509 MLDAMLAKNIRLIDYEKLMDDXGNRVXAFGKYAGVA 616
           +L    A N  L D E L DD G RV AFG +AG A
Sbjct: 107 VLSRFPAGNGLLYDLEFLQDDNGRRVAAFGYHAGFA 142


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 255 KTSAIFTIEREKSRQRRSEGHRPALQSASIPYAVLHK 365
           KTSAI   E  K  + RS        S  +P +VLH+
Sbjct: 402 KTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHR 438


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 435 NRSLLHSKYNAGFADVLLHYRPSIYVRLHRVCS 337
           N  + H K+   F + LL Y PSI+  L ++ S
Sbjct: 626 NLGIQHDKHPTKFMEDLLTYGPSIFEELRKLNS 658


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 ERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQS 357
           E+  PF+P  +K++  +G K    PSN +  P +S
Sbjct: 483 EQNTPFTPPLLKTVNLDGNKDFTFPSNSQNSPSKS 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,502
Number of Sequences: 5004
Number of extensions: 58456
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)